Expression of 1-1-5.3.2.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.823920.324
27DAP/17DAP1.007951
39DAP/27DAP1.089540.949
41DAP/39DAP0.994030.886
42DAP/41DAP1.066120.978
43DAP/42DAP1.128981
47DAP/43DAP0.892530.628
52DAP/47DAP0.861150.622
57DAP/52DAP1.12240.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.130030.126
17DAP/reference1.005870.874
27DAP/reference1.01740.794
39DAP/reference0.981570.624
41DAP/reference0.883240.154
42DAP/reference0.91540.088
43DAP/reference0.944740.36
47DAP/reference0.993750.568
52DAP/reference0.807640.125
57DAP/reference0.871320.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.759390.042
27DAP/17DAP1.244550.133
39DAP/27DAP0.866080.126
41DAP/39DAP0.908250.617
42DAP/41DAP1.030570.824
43DAP/42DAP0.96270.482
47DAP/43DAP0.984440.911
52DAP/47DAP0.981960.913
57DAP/52DAP0.930780.405
57DAP/7DAP0.894811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.221990.124
17DAP/reference1.867530.009
27DAP/reference1.826190.01
39DAP/reference1.544940.008
41DAP/reference1.362560.019
42DAP/reference1.39480.03
43DAP/reference1.094850.386
47DAP/reference1.083720.178
52DAP/reference1.073280.526
57DAP/reference1.129920.382

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.051710.597
17DAP/reference1.03660.789
27DAP/reference1.022721
39DAP/reference0.978090.442
41DAP/reference1.055550.831
42DAP/reference0.976120.433
43DAP/reference0.983360.657
47DAP/reference1.012250.816
52DAP/reference0.753470.111
57DAP/reference0.916660.099

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.123170.251
17DAP/reference1.244040.112
27DAP/reference1.40430.023
39DAP/reference1.130440.045
41DAP/reference1.117070.239
42DAP/reference0.877130.22
43DAP/reference0.981190.614
47DAP/reference0.93170.409
52DAP/reference0.969380.675
57DAP/reference0.87790.045

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.806491
26DAP/20DAP1.077690.834
34DAP/26DAP0.918870.619
51DAP/34DAP0.653720.049
52DAP/51DAP0.998061
53DAP/52DAP1.079910.58
55DAP/53DAP0.940330.577
57DAP/55DAP1.085460.61
62DAP/57DAP0.882910.466
68DAP/62DAP0.951740.787
68DAP/14DAP0.890691

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.756630.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.052510.058
Mature Green Tomato/Ripe Tomato1.820640.026
Immature Eggplant/Mature Eggplant0.721810.077
Ripe Pepper/Ripe Tomato1.445011
Mature Eggplant/Ripe Tomato1.682060.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.964150.883
1-1-2/M821.100611
12-2/M820.985881
12-4/M821.044861
1-3/M821.119121
2-1-1/M82N/AN/A
2-1/M820.710940.322
2-6/M821.006351
3-2/M821.01786
4-1-1/M821.133840.977
4-1/M820.786981
4-3-2/M821.269060.241
4-3/M821.153290.268
5-3/M821.079291
6-2/M821.117151
6-3/M821.086971
7-1/M821.096220.741
7-2/M820.904230.54
9-3-2/M821.043121

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.979531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.973161
IL12-4/WTpooled0.978221
IL1-4/WTpooled0.971051
WT/WTpooled0.957751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.946191

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.091670.875
DC3000/delta hrp 6h0.79970.95
DC3000/delta hrp 12h0.910211
DC3000/delta hrp 24h0.52180.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.425370.024
DC3000 delta B/DC3000 delta AB0.501270.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.917481
Exp 36h0.837820.471
Exp 60h0.608290.253

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987981
Var 0h0.585930.782
Var 12h I row2-row10.867010.357
Var 12h NI row2-row10.990831
Var 36h I row2-row11.19210.368
Var 36h NI row2-row11.001981
Var 60h I row2-row10.981290.952
Var 60h NI row2-row11.017921
Time course 0hI-0hNI0.960170.699
Time course 12hI-12hNI0.968710.806
Time course 36hI-36hNI0.968940.484
Time course 60hI-60hNI0.371220.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.863810.324
transgenic ySAMdc/azygous control (breaker)1.217370.248
transgenic ySAMdc/azygous control (red)1.115370.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.034850.372

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.476850.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.026161
Manapal/WT (break)0.974541
Manapal/WT (red)0.904160.199