Expression of 1-1-5.3.20.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.215480.67
27DAP/17DAP1.055631
39DAP/27DAP0.706490.376
41DAP/39DAP1.66420.231
42DAP/41DAP0.986081
43DAP/42DAP0.998960.937
47DAP/43DAP1.132120.926
52DAP/47DAP1.266460.784
57DAP/52DAP0.827620.783

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.957820.489
17DAP/reference0.959080.147
27DAP/reference0.973030.457
39DAP/reference0.943870.17
41DAP/reference0.952150.667
42DAP/reference0.882970.019
43DAP/reference0.98180.745
47DAP/reference0.823410.003
52DAP/reference0.723670.016
57DAP/reference0.862650.071

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.246640.071
27DAP/17DAP0.88230.137
39DAP/27DAP1.049750.558
41DAP/39DAP0.571710.013
42DAP/41DAP1.147980.291
43DAP/42DAP1.052190.478
47DAP/43DAP0.891170.235
52DAP/47DAP0.938580.79
57DAP/52DAP0.93280.532
57DAP/7DAP1.098891

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069660.545
17DAP/reference0.968220.389
27DAP/reference1.161650.197
39DAP/reference0.907940.264
41DAP/reference0.992630.565
42DAP/reference0.971720.436
43DAP/reference1.173740.241
47DAP/reference0.90850.383
52DAP/reference1.307270.046
57DAP/reference1.557280.082

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.983240.77
17DAP/reference0.98570.659
27DAP/reference0.783510.071
39DAP/reference0.775740.016
41DAP/reference0.876610.096
42DAP/reference0.796080.012
43DAP/reference0.931110.336
47DAP/reference0.827530.011
52DAP/reference0.877870.023
57DAP/reference1.081050.409

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.027580.809
17DAP/reference1.142820.518
27DAP/reference0.866150.089
39DAP/reference1.008410.889
41DAP/reference1.068970.734
42DAP/reference0.884080.361
43DAP/reference1.131530.88
47DAP/reference0.981070.538
52DAP/reference1.125040.463
57DAP/reference0.780080.065

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.195370.966
26DAP/20DAP0.905910.512
34DAP/26DAP1.015211
51DAP/34DAP1.082520.814
52DAP/51DAP1.183380.503
53DAP/52DAP1.014931
55DAP/53DAP1.155280.487
57DAP/55DAP1.079240.915
62DAP/57DAP1.287060.303
68DAP/62DAP0.99130.914
68DAP/14DAP0.932771

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.034751

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.486010.059
Mature Green Tomato/Ripe Tomato1.967890.038
Immature Eggplant/Mature Eggplant1.019280.606
Ripe Pepper/Ripe Tomato1.383241
Mature Eggplant/Ripe Tomato0.359161

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.20030.591
1-1-2/M821.059281
12-2/M821.144571
12-4/M820.921080.619
1-3/M821.314660.479
2-1-1/M821.407470.26
2-1/M821.79896
2-6/M821.640840.335
3-2/M820.999011
4-1-1/M821.96960.968
4-1/M821.029221
4-3-2/M821.969850.284
4-3/M821.940570.268
5-3/M820.77190.49
6-2/M821.14413
6-3/M820.573420.68
7-1/M82N/AN/A
7-2/M821.951830.385
9-3-2/M822.049741

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.129390.277
IL2-6/WTpooled0.964961
IL7-5/WTpooled1.152180.792
IL7-3/WTpooled1.33153
IL12-4/WTpooled0.991231
IL1-4/WTpooled1.066691
WT/WTpooled0.965381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.026031

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993641
DC3000/delta hrp 6h0.99950.95
DC3000/delta hrp 12h1.156041
DC3000/delta hrp 24h1.168410.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.228740.441
DC3000 delta B/DC3000 delta AB0.686010.178

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.165211
Exp 36h1.141141
Exp 60h1.22280.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.945841
Var 0hN/AN/A
Var 12h I row2-row11.1980.692
Var 12h NI row2-row10.870570.82
Var 36h I row2-row11.416960.908
Var 36h NI row2-row11.10011
Var 60h I row2-row10.939390.582
Var 60h NI row2-row11.319720.904
Time course 0hI-0hNI0.962820.852
Time course 12hI-12hNI0.973710.841
Time course 36hI-36hNI1.088110.651
Time course 60hI-60hNI2.139610.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.808250.32
transgenic ySAMdc/azygous control (breaker)1.409070.248
transgenic ySAMdc/azygous control (red)1.098771

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.057760.08

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.784140.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.888690.172
Manapal/WT (break)0.76331
Manapal/WT (red)0.55880.184