Expression of 1-1-5.3.20.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21548 | 0.67 |
27DAP/17DAP | 1.05563 | 1 |
39DAP/27DAP | 0.70649 | 0.376 |
41DAP/39DAP | 1.6642 | 0.231 |
42DAP/41DAP | 0.98608 | 1 |
43DAP/42DAP | 0.99896 | 0.937 |
47DAP/43DAP | 1.13212 | 0.926 |
52DAP/47DAP | 1.26646 | 0.784 |
57DAP/52DAP | 0.82762 | 0.783 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95782 | 0.489 |
17DAP/reference | 0.95908 | 0.147 |
27DAP/reference | 0.97303 | 0.457 |
39DAP/reference | 0.94387 | 0.17 |
41DAP/reference | 0.95215 | 0.667 |
42DAP/reference | 0.88297 | 0.019 |
43DAP/reference | 0.9818 | 0.745 |
47DAP/reference | 0.82341 | 0.003 |
52DAP/reference | 0.72367 | 0.016 |
57DAP/reference | 0.86265 | 0.071 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24664 | 0.071 |
27DAP/17DAP | 0.8823 | 0.137 |
39DAP/27DAP | 1.04975 | 0.558 |
41DAP/39DAP | 0.57171 | 0.013 |
42DAP/41DAP | 1.14798 | 0.291 |
43DAP/42DAP | 1.05219 | 0.478 |
47DAP/43DAP | 0.89117 | 0.235 |
52DAP/47DAP | 0.93858 | 0.79 |
57DAP/52DAP | 0.9328 | 0.532 |
57DAP/7DAP | 1.09889 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06966 | 0.545 |
17DAP/reference | 0.96822 | 0.389 |
27DAP/reference | 1.16165 | 0.197 |
39DAP/reference | 0.90794 | 0.264 |
41DAP/reference | 0.99263 | 0.565 |
42DAP/reference | 0.97172 | 0.436 |
43DAP/reference | 1.17374 | 0.241 |
47DAP/reference | 0.9085 | 0.383 |
52DAP/reference | 1.30727 | 0.046 |
57DAP/reference | 1.55728 | 0.082 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98324 | 0.77 |
17DAP/reference | 0.9857 | 0.659 |
27DAP/reference | 0.78351 | 0.071 |
39DAP/reference | 0.77574 | 0.016 |
41DAP/reference | 0.87661 | 0.096 |
42DAP/reference | 0.79608 | 0.012 |
43DAP/reference | 0.93111 | 0.336 |
47DAP/reference | 0.82753 | 0.011 |
52DAP/reference | 0.87787 | 0.023 |
57DAP/reference | 1.08105 | 0.409 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02758 | 0.809 |
17DAP/reference | 1.14282 | 0.518 |
27DAP/reference | 0.86615 | 0.089 |
39DAP/reference | 1.00841 | 0.889 |
41DAP/reference | 1.06897 | 0.734 |
42DAP/reference | 0.88408 | 0.361 |
43DAP/reference | 1.13153 | 0.88 |
47DAP/reference | 0.98107 | 0.538 |
52DAP/reference | 1.12504 | 0.463 |
57DAP/reference | 0.78008 | 0.065 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19537 | 0.966 |
26DAP/20DAP | 0.90591 | 0.512 |
34DAP/26DAP | 1.01521 | 1 |
51DAP/34DAP | 1.08252 | 0.814 |
52DAP/51DAP | 1.18338 | 0.503 |
53DAP/52DAP | 1.01493 | 1 |
55DAP/53DAP | 1.15528 | 0.487 |
57DAP/55DAP | 1.07924 | 0.915 |
62DAP/57DAP | 1.28706 | 0.303 |
68DAP/62DAP | 0.9913 | 0.914 |
68DAP/14DAP | 0.93277 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03475 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.48601 | 0.059 |
Mature Green Tomato/Ripe Tomato | 1.96789 | 0.038 |
Immature Eggplant/Mature Eggplant | 1.01928 | 0.606 |
Ripe Pepper/Ripe Tomato | 1.38324 | 1 |
Mature Eggplant/Ripe Tomato | 0.35916 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.2003 | 0.591 |
1-1-2/M82 | 1.05928 | 1 |
12-2/M82 | 1.14457 | 1 |
12-4/M82 | 0.92108 | 0.619 |
1-3/M82 | 1.31466 | 0.479 |
2-1-1/M82 | 1.40747 | 0.26 |
2-1/M82 | 1.79896 | |
2-6/M82 | 1.64084 | 0.335 |
3-2/M82 | 0.99901 | 1 |
4-1-1/M82 | 1.9696 | 0.968 |
4-1/M82 | 1.02922 | 1 |
4-3-2/M82 | 1.96985 | 0.284 |
4-3/M82 | 1.94057 | 0.268 |
5-3/M82 | 0.7719 | 0.49 |
6-2/M82 | 1.14413 | |
6-3/M82 | 0.57342 | 0.68 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.95183 | 0.385 |
9-3-2/M82 | 2.04974 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12939 | 0.277 |
IL2-6/WTpooled | 0.96496 | 1 |
IL7-5/WTpooled | 1.15218 | 0.792 |
IL7-3/WTpooled | 1.33153 | |
IL12-4/WTpooled | 0.99123 | 1 |
IL1-4/WTpooled | 1.06669 | 1 |
WT/WTpooled | 0.96538 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02603 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99364 | 1 |
DC3000/delta hrp 6h | 0.9995 | 0.95 |
DC3000/delta hrp 12h | 1.15604 | 1 |
DC3000/delta hrp 24h | 1.16841 | 0.453 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.22874 | 0.441 |
DC3000 delta B/DC3000 delta AB | 0.68601 | 0.178 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.16521 | 1 |
Exp 36h | 1.14114 | 1 |
Exp 60h | 1.2228 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94584 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.198 | 0.692 |
Var 12h NI row2-row1 | 0.87057 | 0.82 |
Var 36h I row2-row1 | 1.41696 | 0.908 |
Var 36h NI row2-row1 | 1.1001 | 1 |
Var 60h I row2-row1 | 0.93939 | 0.582 |
Var 60h NI row2-row1 | 1.31972 | 0.904 |
Time course 0hI-0hNI | 0.96282 | 0.852 |
Time course 12hI-12hNI | 0.97371 | 0.841 |
Time course 36hI-36hNI | 1.08811 | 0.651 |
Time course 60hI-60hNI | 2.13961 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.80825 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 1.40907 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.09877 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05776 | 0.08 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.78414 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88869 | 0.172 |
Manapal/WT (break) | 0.7633 | 1 |
Manapal/WT (red) | 0.5588 | 0.184 |
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