Expression of 1-1-5.3.3.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.01205 | 0.042 |
27DAP/17DAP | 0.97605 | 0.994 |
39DAP/27DAP | 1.27154 | 0.729 |
41DAP/39DAP | 0.67955 | 0.068 |
42DAP/41DAP | 0.71775 | 0.774 |
43DAP/42DAP | 1.2541 | 0.661 |
47DAP/43DAP | 0.64418 | 0.084 |
52DAP/47DAP | 0.94637 | 0.783 |
57DAP/52DAP | 1.46999 | 0.576 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13371 | 0.587 |
17DAP/reference | 0.97301 | 0.63 |
27DAP/reference | 0.92802 | 0.395 |
39DAP/reference | 0.96882 | 0.72 |
41DAP/reference | 0.9126 | 0.154 |
42DAP/reference | 0.91775 | 0.182 |
43DAP/reference | 0.50047 | 0.025 |
47DAP/reference | 0.83563 | 0.027 |
52DAP/reference | 0.84777 | 0.128 |
57DAP/reference | 0.37244 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.61422 | 0.05 |
27DAP/17DAP | 1.36946 | 0.426 |
39DAP/27DAP | 0.86927 | 0.426 |
41DAP/39DAP | 1.21684 | 0.909 |
42DAP/41DAP | 1.1033 | 0.927 |
43DAP/42DAP | 0.62152 | 0.022 |
47DAP/43DAP | 0.8995 | 0.373 |
52DAP/47DAP | 1.24627 | 0.397 |
57DAP/52DAP | 1.245 | 0.179 |
57DAP/7DAP | 0.67431 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.46031 | 0.028 |
17DAP/reference | 1.38455 | 0.035 |
27DAP/reference | 1.07267 | 0.804 |
39DAP/reference | 1.3389 | 0.028 |
41DAP/reference | 1.11229 | 0.445 |
42DAP/reference | 1.11908 | 0.686 |
43DAP/reference | 1.2663 | 0.087 |
47DAP/reference | 1.56858 | 0.025 |
52DAP/reference | 1.49711 | 0.01 |
57DAP/reference | 1.39042 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97274 | 0.72 |
17DAP/reference | 1.53064 | 0.028 |
27DAP/reference | 1.8388 | 0.038 |
39DAP/reference | 1.32919 | 0.112 |
41DAP/reference | 1.42461 | 0.153 |
42DAP/reference | 1.54945 | 0.009 |
43DAP/reference | 0.87773 | 0.212 |
47DAP/reference | 1.39923 | 0.008 |
52DAP/reference | 1.24358 | 0.702 |
57DAP/reference | 0.96022 | 0.519 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.4731 | 0.021 |
17DAP/reference | 1.11422 | 0.436 |
27DAP/reference | 1.11429 | 0.216 |
39DAP/reference | 1.44787 | 0.008 |
41DAP/reference | 1.09956 | 0.84 |
42DAP/reference | 1.10001 | 0.759 |
43DAP/reference | 1.03103 | 0.858 |
47DAP/reference | 0.86665 | 0.097 |
52DAP/reference | 1.17833 | 0.542 |
57DAP/reference | 0.94032 | 0.353 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11111 | 0.966 |
26DAP/20DAP | 3.80237 | 0.133 |
34DAP/26DAP | 0.73134 | 0.44 |
51DAP/34DAP | 1.67662 | 0.149 |
52DAP/51DAP | 1.05596 | 0.77 |
53DAP/52DAP | 0.9504 | 0.783 |
55DAP/53DAP | 0.68361 | 0.022 |
57DAP/55DAP | 1.007 | 0.789 |
62DAP/57DAP | 1.22633 | 0.35 |
68DAP/62DAP | 1.11144 | 1 |
68DAP/14DAP | 3.26113 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.6014 | 0.027 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.09316 | 0.176 |
Mature Green Tomato/Ripe Tomato | 3.02891 | 0.019 |
Immature Eggplant/Mature Eggplant | 1.33613 | 0.051 |
Ripe Pepper/Ripe Tomato | 1.17994 | 1 |
Mature Eggplant/Ripe Tomato | 1.74319 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92739 | 0.944 |
1-1-2/M82 | 1.20474 | 1 |
12-2/M82 | 0.91219 | 0.955 |
12-4/M82 | 1.21725 | 1 |
1-3/M82 | 2.10194 | 0.248 |
2-1-1/M82 | 1.13559 | 1 |
2-1/M82 | 0.98118 | 1 |
2-6/M82 | 0.81517 | 1 |
3-2/M82 | 1.46288 | 0.717 |
4-1-1/M82 | 1.2088 | 1 |
4-1/M82 | 1.81176 | 0.853 |
4-3-2/M82 | 1.1588 | 0.508 |
4-3/M82 | 1.35568 | 1 |
5-3/M82 | 1.09657 | 1 |
6-2/M82 | 2.10815 | 0.253 |
6-3/M82 | 0.65514 | 0.916 |
7-1/M82 | 1.07529 | 1 |
7-2/M82 | 1.29069 | 0.302 |
9-3-2/M82 | 1.22185 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.49647 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.95314 | 0.834 |
WT/WTpooled | 1.50732 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15582 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00044 | 1 |
DC3000/delta hrp 6h | 0.84173 | 0.95 |
DC3000/delta hrp 12h | 1.00276 | 1 |
DC3000/delta hrp 24h | 1.09224 | 0.254 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.32326 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.20677 | 0.173 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.18378 | 1 |
Exp 36h | 1.48657 | 0.489 |
Exp 60h | 1.46794 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98486 | 1 |
Var 0h | 0.47011 | 1 |
Var 12h I row2-row1 | 0.90346 | 0.338 |
Var 12h NI row2-row1 | 0.95698 | 0.627 |
Var 36h I row2-row1 | 0.9565 | 1 |
Var 36h NI row2-row1 | 1.34293 | 1 |
Var 60h I row2-row1 | 1.00112 | 1 |
Var 60h NI row2-row1 | 1.08244 | 0.904 |
Time course 0hI-0hNI | 0.99632 | 1 |
Time course 12hI-12hNI | 1.00057 | 1 |
Time course 36hI-36hNI | 0.86261 | 0.023 |
Time course 60hI-60hNI | 0.49995 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02229 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.66842 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.89106 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03133 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.6366 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.58381 | 0.172 |
Manapal/WT (break) | 0.88523 | 1 |
Manapal/WT (red) | 1.34571 | 0.222 |
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