Expression of 1-1-5.3.3.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.012050.042
27DAP/17DAP0.976050.994
39DAP/27DAP1.271540.729
41DAP/39DAP0.679550.068
42DAP/41DAP0.717750.774
43DAP/42DAP1.25410.661
47DAP/43DAP0.644180.084
52DAP/47DAP0.946370.783
57DAP/52DAP1.469990.576

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.133710.587
17DAP/reference0.973010.63
27DAP/reference0.928020.395
39DAP/reference0.968820.72
41DAP/reference0.91260.154
42DAP/reference0.917750.182
43DAP/reference0.500470.025
47DAP/reference0.835630.027
52DAP/reference0.847770.128
57DAP/reference0.37244

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.614220.05
27DAP/17DAP1.369460.426
39DAP/27DAP0.869270.426
41DAP/39DAP1.216840.909
42DAP/41DAP1.10330.927
43DAP/42DAP0.621520.022
47DAP/43DAP0.89950.373
52DAP/47DAP1.246270.397
57DAP/52DAP1.2450.179
57DAP/7DAP0.674311

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.460310.028
17DAP/reference1.384550.035
27DAP/reference1.072670.804
39DAP/reference1.33890.028
41DAP/reference1.112290.445
42DAP/reference1.119080.686
43DAP/reference1.26630.087
47DAP/reference1.568580.025
52DAP/reference1.497110.01
57DAP/reference1.390420.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.972740.72
17DAP/reference1.530640.028
27DAP/reference1.83880.038
39DAP/reference1.329190.112
41DAP/reference1.424610.153
42DAP/reference1.549450.009
43DAP/reference0.877730.212
47DAP/reference1.399230.008
52DAP/reference1.243580.702
57DAP/reference0.960220.519

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.47310.021
17DAP/reference1.114220.436
27DAP/reference1.114290.216
39DAP/reference1.447870.008
41DAP/reference1.099560.84
42DAP/reference1.100010.759
43DAP/reference1.031030.858
47DAP/reference0.866650.097
52DAP/reference1.178330.542
57DAP/reference0.940320.353

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.111110.966
26DAP/20DAP3.802370.133
34DAP/26DAP0.731340.44
51DAP/34DAP1.676620.149
52DAP/51DAP1.055960.77
53DAP/52DAP0.95040.783
55DAP/53DAP0.683610.022
57DAP/55DAP1.0070.789
62DAP/57DAP1.226330.35
68DAP/62DAP1.111441
68DAP/14DAP3.261130.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.60140.027

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.093160.176
Mature Green Tomato/Ripe Tomato3.028910.019
Immature Eggplant/Mature Eggplant1.336130.051
Ripe Pepper/Ripe Tomato1.179941
Mature Eggplant/Ripe Tomato1.743190.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.927390.944
1-1-2/M821.204741
12-2/M820.912190.955
12-4/M821.217251
1-3/M822.101940.248
2-1-1/M821.135591
2-1/M820.981181
2-6/M820.815171
3-2/M821.462880.717
4-1-1/M821.20881
4-1/M821.811760.853
4-3-2/M821.15880.508
4-3/M821.355681
5-3/M821.096571
6-2/M822.108150.253
6-3/M820.655140.916
7-1/M821.075291
7-2/M821.290690.302
9-3-2/M821.221851

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.49647
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.953140.834
WT/WTpooled1.50732

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.155820.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.000441
DC3000/delta hrp 6h0.841730.95
DC3000/delta hrp 12h1.002761
DC3000/delta hrp 24h1.092240.254

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.323260.042
DC3000 delta B/DC3000 delta AB1.206770.173

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.183781
Exp 36h1.486570.489
Exp 60h1.467940.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.984861
Var 0h0.470111
Var 12h I row2-row10.903460.338
Var 12h NI row2-row10.956980.627
Var 36h I row2-row10.95651
Var 36h NI row2-row11.342931
Var 60h I row2-row11.001121
Var 60h NI row2-row11.082440.904
Time course 0hI-0hNI0.996321
Time course 12hI-12hNI1.000571
Time course 36hI-36hNI0.862610.023
Time course 60hI-60hNI0.499950.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.022290.798
transgenic ySAMdc/azygous control (breaker)0.668420.173
transgenic ySAMdc/azygous control (red)0.891061

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.031330.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.63660.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.583810.172
Manapal/WT (break)0.885231
Manapal/WT (red)1.345710.222