Expression of 1-1-5.3.3.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.762640.265
27DAP/17DAP0.850730.873
39DAP/27DAP1.124450.779
41DAP/39DAP0.938690.873
42DAP/41DAP0.945821
43DAP/42DAP1.613830.349
47DAP/43DAP0.745180.314
52DAP/47DAP1.219730.949
57DAP/52DAP0.783250.949

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.18484
17DAP/reference1.30715
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/reference0.93181
42DAP/reference1.080350.628
43DAP/reference0.44657
47DAP/reference1.157330.558
52DAP/reference0.41528
57DAP/reference1.93523

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.25942
27DAP/17DAP0.11898
39DAP/27DAP1.30177
41DAP/39DAPN/AN/A
42DAP/41DAP1.601220.023
43DAP/42DAP0.80302
47DAP/43DAPN/AN/A
52DAP/47DAP1.600820.216
57DAP/52DAPN/AN/A
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.577430.061
17DAP/reference0.81870.072
27DAP/reference0.851870.016
39DAP/reference0.710210.049
41DAP/reference0.624250.012
42DAP/reference0.795080.01
43DAP/reference0.688610.033
47DAP/reference0.988041
52DAP/reference0.660650.011
57DAP/reference0.687260.027

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.417790.289
17DAP/reference1.09421
27DAP/reference1.234520.412
39DAP/referenceN/AN/A
41DAP/reference1.18842
42DAP/reference0.772570.212
43DAP/reference0.887290.404
47DAP/reference1.657840.247
52DAP/reference1.311310.666
57DAP/referenceN/AN/A

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.868990.098
17DAP/reference0.921250.462
27DAP/reference0.9090.257
39DAP/reference0.988790.643
41DAP/reference0.769690.037
42DAP/reference1.222820.816
43DAP/reference0.955610.503
47DAP/reference1.352490.005
52DAP/reference1.322250.583
57DAP/reference1.69930.511

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.933951
26DAP/20DAP0.84281
34DAP/26DAP0.648330.596
51DAP/34DAP3.709080.377
52DAP/51DAP0.49087
53DAP/52DAP1.21256
55DAP/53DAP1.157610.939
57DAP/55DAP1.53793
62DAP/57DAPN/AN/A
68DAP/62DAP0.4926
68DAP/14DAP3.11814

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.467310.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M820.94921
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.04522
IL2-6/WTpooled1.004651
IL7-5/WTpooled0.808311
IL7-3/WTpooled0.824861
IL12-4/WTpooled0.982071
IL1-4/WTpooled0.925810.834
WT/WTpooled1.010921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.230170.083
Manapal/WT (break)0.848181
Manapal/WT (red)1.715280.222