Expression of 1-1-5.3.3.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.913230.05
27DAP/17DAP1.325430.761
39DAP/27DAP1.592220.132
41DAP/39DAP0.539860.041
42DAP/41DAP2.505820.042
43DAP/42DAP2.315430.121
47DAP/43DAP2.132090.223
52DAP/47DAP1.509870.516
57DAP/52DAP1.750990.918

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.598530.044
17DAP/reference0.524630.009
27DAP/reference0.799990.182
39DAP/reference0.622060.017
41DAP/reference0.470430.012
42DAP/reference0.901960.188
43DAP/reference2.70661
47DAP/reference3.541960.175
52DAP/reference6.561140.007
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.270610.119
27DAP/17DAP1.168670.645
39DAP/27DAP1.141070.575
41DAP/39DAP1.070850.91
42DAP/41DAP1.71660.026
43DAP/42DAP1.297080.122
47DAP/43DAP1.194620.231
52DAP/47DAP1.811080.081
57DAP/52DAP1.406610.265
57DAP/7DAP3.519780.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.691810.091
17DAP/reference0.741860.011
27DAP/reference0.715110.012
39DAP/reference0.825260.095
41DAP/reference0.652130.019
42DAP/reference0.782340.035
43DAP/reference0.933220.351
47DAP/reference0.901290.383
52DAP/reference0.722630.049
57DAP/reference0.609270.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.431840.007
17DAP/reference0.623010.006
27DAP/reference1.243020.81
39DAP/reference1.02650.702
41DAP/reference0.725470.033
42DAP/reference0.937260.355
43DAP/reference0.498120.009
47DAP/reference0.629050.008
52DAP/reference0.531890.003
57DAP/reference0.486840.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.623340.033
17DAP/reference0.840210.262
27DAP/reference0.662110.024
39DAP/reference0.8950.101
41DAP/reference0.883140.107
42DAP/reference1.295810.443
43DAP/reference2.124890.02
47DAP/reference3.63920.005
52DAP/reference4.04980.03
57DAP/reference14.55210.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.642210.733
26DAP/20DAP1.170770.471
34DAP/26DAP1.020081
51DAP/34DAP2.093510.046
52DAP/51DAP1.02050.873
53DAP/52DAP0.905470.498
55DAP/53DAP0.867950.218
57DAP/55DAP0.993250.93
62DAP/57DAP2.002520.003
68DAP/62DAP0.903730.722
68DAP/14DAP1.779810.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker10.85740.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.747910.213
Mature Green Tomato/Ripe Tomato0.229120.016
Immature Eggplant/Mature Eggplant0.856110.407
Ripe Pepper/Ripe Tomato0.228280.224
Mature Eggplant/Ripe Tomato0.074870.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.437750.574
1-1-2/M821.452911
12-2/M820.914380.74
12-4/M821.04521
1-3/M822.395120.277
2-1-1/M820.810710.565
2-1/M820.994021
2-6/M820.975881
3-2/M821.153830.717
4-1-1/M821.053361
4-1/M822.623120.853
4-3-2/M821.18730.262
4-3/M820.97761
5-3/M820.730350.447
6-2/M820.482570.481
6-3/M820.909231
7-1/M821.023141
7-2/M821.120751
9-3-2/M821.94921

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.965411
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.210180.792
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.64727
IL1-4/WTpooled1.087081
WT/WTpooled0.93516

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.809510.209

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.062970.921
DC3000/delta hrp 6h0.970750.95
DC3000/delta hrp 12h1.310281
DC3000/delta hrp 24h1.01560.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.689640.513
DC3000 delta B/DC3000 delta AB0.657860.022

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.927210.328
Exp 36h1.337191
Exp 60h1.290570.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999921
Var 0h0.527521
Var 12h I row2-row10.800370.338
Var 12h NI row2-row10.950860.713
Var 36h I row2-row10.78330.805
Var 36h NI row2-row11.122861
Var 60h I row2-row11.149310.543
Var 60h NI row2-row11.16920.586
Time course 0hI-0hNI0.939990.461
Time course 12hI-12hNI0.970990.581
Time course 36hI-36hNI0.834480.023
Time course 60hI-60hNI0.234920.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.205810.261
transgenic ySAMdc/azygous control (breaker)1.27251
transgenic ySAMdc/azygous control (red)1.032071

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.979490.609

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.123610.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.826410.14
Manapal/WT (break)1.086871
Manapal/WT (red)0.206350.181