Expression of 1-1-5.3.3.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.91323 | 0.05 |
27DAP/17DAP | 1.32543 | 0.761 |
39DAP/27DAP | 1.59222 | 0.132 |
41DAP/39DAP | 0.53986 | 0.041 |
42DAP/41DAP | 2.50582 | 0.042 |
43DAP/42DAP | 2.31543 | 0.121 |
47DAP/43DAP | 2.13209 | 0.223 |
52DAP/47DAP | 1.50987 | 0.516 |
57DAP/52DAP | 1.75099 | 0.918 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.59853 | 0.044 |
17DAP/reference | 0.52463 | 0.009 |
27DAP/reference | 0.79999 | 0.182 |
39DAP/reference | 0.62206 | 0.017 |
41DAP/reference | 0.47043 | 0.012 |
42DAP/reference | 0.90196 | 0.188 |
43DAP/reference | 2.70661 | |
47DAP/reference | 3.54196 | 0.175 |
52DAP/reference | 6.56114 | 0.007 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.27061 | 0.119 |
27DAP/17DAP | 1.16867 | 0.645 |
39DAP/27DAP | 1.14107 | 0.575 |
41DAP/39DAP | 1.07085 | 0.91 |
42DAP/41DAP | 1.7166 | 0.026 |
43DAP/42DAP | 1.29708 | 0.122 |
47DAP/43DAP | 1.19462 | 0.231 |
52DAP/47DAP | 1.81108 | 0.081 |
57DAP/52DAP | 1.40661 | 0.265 |
57DAP/7DAP | 3.51978 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.69181 | 0.091 |
17DAP/reference | 0.74186 | 0.011 |
27DAP/reference | 0.71511 | 0.012 |
39DAP/reference | 0.82526 | 0.095 |
41DAP/reference | 0.65213 | 0.019 |
42DAP/reference | 0.78234 | 0.035 |
43DAP/reference | 0.93322 | 0.351 |
47DAP/reference | 0.90129 | 0.383 |
52DAP/reference | 0.72263 | 0.049 |
57DAP/reference | 0.60927 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.43184 | 0.007 |
17DAP/reference | 0.62301 | 0.006 |
27DAP/reference | 1.24302 | 0.81 |
39DAP/reference | 1.0265 | 0.702 |
41DAP/reference | 0.72547 | 0.033 |
42DAP/reference | 0.93726 | 0.355 |
43DAP/reference | 0.49812 | 0.009 |
47DAP/reference | 0.62905 | 0.008 |
52DAP/reference | 0.53189 | 0.003 |
57DAP/reference | 0.48684 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.62334 | 0.033 |
17DAP/reference | 0.84021 | 0.262 |
27DAP/reference | 0.66211 | 0.024 |
39DAP/reference | 0.895 | 0.101 |
41DAP/reference | 0.88314 | 0.107 |
42DAP/reference | 1.29581 | 0.443 |
43DAP/reference | 2.12489 | 0.02 |
47DAP/reference | 3.6392 | 0.005 |
52DAP/reference | 4.0498 | 0.03 |
57DAP/reference | 14.5521 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.64221 | 0.733 |
26DAP/20DAP | 1.17077 | 0.471 |
34DAP/26DAP | 1.02008 | 1 |
51DAP/34DAP | 2.09351 | 0.046 |
52DAP/51DAP | 1.0205 | 0.873 |
53DAP/52DAP | 0.90547 | 0.498 |
55DAP/53DAP | 0.86795 | 0.218 |
57DAP/55DAP | 0.99325 | 0.93 |
62DAP/57DAP | 2.00252 | 0.003 |
68DAP/62DAP | 0.90373 | 0.722 |
68DAP/14DAP | 1.77981 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 10.8574 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.74791 | 0.213 |
Mature Green Tomato/Ripe Tomato | 0.22912 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.85611 | 0.407 |
Ripe Pepper/Ripe Tomato | 0.22828 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.07487 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.43775 | 0.574 |
1-1-2/M82 | 1.45291 | 1 |
12-2/M82 | 0.91438 | 0.74 |
12-4/M82 | 1.0452 | 1 |
1-3/M82 | 2.39512 | 0.277 |
2-1-1/M82 | 0.81071 | 0.565 |
2-1/M82 | 0.99402 | 1 |
2-6/M82 | 0.97588 | 1 |
3-2/M82 | 1.15383 | 0.717 |
4-1-1/M82 | 1.05336 | 1 |
4-1/M82 | 2.62312 | 0.853 |
4-3-2/M82 | 1.1873 | 0.262 |
4-3/M82 | 0.9776 | 1 |
5-3/M82 | 0.73035 | 0.447 |
6-2/M82 | 0.48257 | 0.481 |
6-3/M82 | 0.90923 | 1 |
7-1/M82 | 1.02314 | 1 |
7-2/M82 | 1.12075 | 1 |
9-3-2/M82 | 1.9492 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.96541 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.21018 | 0.792 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.64727 | |
IL1-4/WTpooled | 1.08708 | 1 |
WT/WTpooled | 0.93516 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.80951 | 0.209 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06297 | 0.921 |
DC3000/delta hrp 6h | 0.97075 | 0.95 |
DC3000/delta hrp 12h | 1.31028 | 1 |
DC3000/delta hrp 24h | 1.0156 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.68964 | 0.513 |
DC3000 delta B/DC3000 delta AB | 0.65786 | 0.022 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.92721 | 0.328 |
Exp 36h | 1.33719 | 1 |
Exp 60h | 1.29057 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99992 | 1 |
Var 0h | 0.52752 | 1 |
Var 12h I row2-row1 | 0.80037 | 0.338 |
Var 12h NI row2-row1 | 0.95086 | 0.713 |
Var 36h I row2-row1 | 0.7833 | 0.805 |
Var 36h NI row2-row1 | 1.12286 | 1 |
Var 60h I row2-row1 | 1.14931 | 0.543 |
Var 60h NI row2-row1 | 1.1692 | 0.586 |
Time course 0hI-0hNI | 0.93999 | 0.461 |
Time course 12hI-12hNI | 0.97099 | 0.581 |
Time course 36hI-36hNI | 0.83448 | 0.023 |
Time course 60hI-60hNI | 0.23492 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.20581 | 0.261 |
transgenic ySAMdc/azygous control (breaker) | 1.2725 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03207 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97949 | 0.609 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.12361 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.82641 | 0.14 |
Manapal/WT (break) | 1.08687 | 1 |
Manapal/WT (red) | 0.20635 | 0.181 |
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