Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.3.3.15

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	2.02503	0.325
27DAP/17DAP	0.42035
39DAP/27DAP	1.7606	0.83
41DAP/39DAP	1.19069
42DAP/41DAP	1.10488	1
43DAP/42DAP	0.96781	0.925
47DAP/43DAP	1.02475	1
52DAP/47DAP	1.54309	0.333
57DAP/52DAP	1.69151	1

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.48377	0.23
17DAP/reference	1.25123	0.306
27DAP/reference	1.68101	0.008
39DAP/reference	1.26658
41DAP/reference	1.98254
42DAP/reference	2.06166
43DAP/reference	N/A	N/A
47DAP/reference	N/A	N/A
52DAP/reference	N/A	N/A
57DAP/reference	0.63427

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	3.33316
27DAP/17DAP	1.35111	0.413
39DAP/27DAP	N/A	N/A
41DAP/39DAP	1.13972
42DAP/41DAP	0.62376	0.461
43DAP/42DAP	0.83727	0.729
47DAP/43DAP	0.80499	0.656
52DAP/47DAP	1.43388	0.93
57DAP/52DAP	N/A	N/A
57DAP/7DAP	0.60213

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.81708	0.066
17DAP/reference	0.98169	0.518
27DAP/reference	1.04028	1
39DAP/reference	0.86822	0.126
41DAP/reference	0.88023	0.259
42DAP/reference	0.83408	0.066
43DAP/reference	0.86269	0.095
47DAP/reference	1.08114	0.685
52DAP/reference	0.78238	0.077
57DAP/reference	0.99359	0.629

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.25792	0.863
17DAP/reference	1.42133	0.571
27DAP/reference	1.14223	0.988
39DAP/reference	0.64722
41DAP/reference	2.17401	0.471
42DAP/reference	0.99502	0.655
43DAP/reference	1.11428	0.424
47DAP/reference	1.54928	0.128
52DAP/reference	1.82122	0.014
57DAP/reference	1.38583	0.007

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.84033	0.057
17DAP/reference	0.94696	0.624
27DAP/reference	1.18004	0.248
39DAP/reference	0.95916	0.464
41DAP/reference	1.04393	0.889
42DAP/reference	1.12528	1
43DAP/reference	0.93675	0.384
47DAP/reference	1.35464
52DAP/reference	1.64013	0.558
57DAP/reference	1.36292	0.401

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.75547	0.265
26DAP/20DAP	N/A	N/A
34DAP/26DAP	N/A	N/A
51DAP/34DAP	0.33189
52DAP/51DAP	N/A	N/A
53DAP/52DAP	0.70553	0.062
55DAP/53DAP	1.09921	0.939
57DAP/55DAP	1.66036
62DAP/57DAP	0.76817
68DAP/62DAP	N/A	N/A
68DAP/14DAP	0.20707

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	1.23525
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	0.84518	0.71
IL1-4/WTpooled	1.97633	1
WT/WTpooled	0.87268

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A