Expression of 1-1-5.3.3.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.02503 | 0.325 |
27DAP/17DAP | 0.42035 | |
39DAP/27DAP | 1.7606 | 0.83 |
41DAP/39DAP | 1.19069 | |
42DAP/41DAP | 1.10488 | 1 |
43DAP/42DAP | 0.96781 | 0.925 |
47DAP/43DAP | 1.02475 | 1 |
52DAP/47DAP | 1.54309 | 0.333 |
57DAP/52DAP | 1.69151 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48377 | 0.23 |
17DAP/reference | 1.25123 | 0.306 |
27DAP/reference | 1.68101 | 0.008 |
39DAP/reference | 1.26658 | |
41DAP/reference | 1.98254 | |
42DAP/reference | 2.06166 | |
43DAP/reference | N/A | N/A |
47DAP/reference | N/A | N/A |
52DAP/reference | N/A | N/A |
57DAP/reference | 0.63427 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 3.33316 | |
27DAP/17DAP | 1.35111 | 0.413 |
39DAP/27DAP | N/A | N/A |
41DAP/39DAP | 1.13972 | |
42DAP/41DAP | 0.62376 | 0.461 |
43DAP/42DAP | 0.83727 | 0.729 |
47DAP/43DAP | 0.80499 | 0.656 |
52DAP/47DAP | 1.43388 | 0.93 |
57DAP/52DAP | N/A | N/A |
57DAP/7DAP | 0.60213 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81708 | 0.066 |
17DAP/reference | 0.98169 | 0.518 |
27DAP/reference | 1.04028 | 1 |
39DAP/reference | 0.86822 | 0.126 |
41DAP/reference | 0.88023 | 0.259 |
42DAP/reference | 0.83408 | 0.066 |
43DAP/reference | 0.86269 | 0.095 |
47DAP/reference | 1.08114 | 0.685 |
52DAP/reference | 0.78238 | 0.077 |
57DAP/reference | 0.99359 | 0.629 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25792 | 0.863 |
17DAP/reference | 1.42133 | 0.571 |
27DAP/reference | 1.14223 | 0.988 |
39DAP/reference | 0.64722 | |
41DAP/reference | 2.17401 | 0.471 |
42DAP/reference | 0.99502 | 0.655 |
43DAP/reference | 1.11428 | 0.424 |
47DAP/reference | 1.54928 | 0.128 |
52DAP/reference | 1.82122 | 0.014 |
57DAP/reference | 1.38583 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84033 | 0.057 |
17DAP/reference | 0.94696 | 0.624 |
27DAP/reference | 1.18004 | 0.248 |
39DAP/reference | 0.95916 | 0.464 |
41DAP/reference | 1.04393 | 0.889 |
42DAP/reference | 1.12528 | 1 |
43DAP/reference | 0.93675 | 0.384 |
47DAP/reference | 1.35464 | |
52DAP/reference | 1.64013 | 0.558 |
57DAP/reference | 1.36292 | 0.401 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.75547 | 0.265 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | N/A | N/A |
51DAP/34DAP | 0.33189 | |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 0.70553 | 0.062 |
55DAP/53DAP | 1.09921 | 0.939 |
57DAP/55DAP | 1.66036 | |
62DAP/57DAP | 0.76817 | |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 0.20707 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.23525 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.84518 | 0.71 |
IL1-4/WTpooled | 1.97633 | 1 |
WT/WTpooled | 0.87268 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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