Expression of 1-1-5.3.3.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.025030.325
27DAP/17DAP0.42035
39DAP/27DAP1.76060.83
41DAP/39DAP1.19069
42DAP/41DAP1.104881
43DAP/42DAP0.967810.925
47DAP/43DAP1.024751
52DAP/47DAP1.543090.333
57DAP/52DAP1.691511

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.483770.23
17DAP/reference1.251230.306
27DAP/reference1.681010.008
39DAP/reference1.26658
41DAP/reference1.98254
42DAP/reference2.06166
43DAP/referenceN/AN/A
47DAP/referenceN/AN/A
52DAP/referenceN/AN/A
57DAP/reference0.63427

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP3.33316
27DAP/17DAP1.351110.413
39DAP/27DAPN/AN/A
41DAP/39DAP1.13972
42DAP/41DAP0.623760.461
43DAP/42DAP0.837270.729
47DAP/43DAP0.804990.656
52DAP/47DAP1.433880.93
57DAP/52DAPN/AN/A
57DAP/7DAP0.60213

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.817080.066
17DAP/reference0.981690.518
27DAP/reference1.040281
39DAP/reference0.868220.126
41DAP/reference0.880230.259
42DAP/reference0.834080.066
43DAP/reference0.862690.095
47DAP/reference1.081140.685
52DAP/reference0.782380.077
57DAP/reference0.993590.629

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.257920.863
17DAP/reference1.421330.571
27DAP/reference1.142230.988
39DAP/reference0.64722
41DAP/reference2.174010.471
42DAP/reference0.995020.655
43DAP/reference1.114280.424
47DAP/reference1.549280.128
52DAP/reference1.821220.014
57DAP/reference1.385830.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.840330.057
17DAP/reference0.946960.624
27DAP/reference1.180040.248
39DAP/reference0.959160.464
41DAP/reference1.043930.889
42DAP/reference1.125281
43DAP/reference0.936750.384
47DAP/reference1.35464
52DAP/reference1.640130.558
57DAP/reference1.362920.401

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.755470.265
26DAP/20DAPN/AN/A
34DAP/26DAPN/AN/A
51DAP/34DAP0.33189
52DAP/51DAPN/AN/A
53DAP/52DAP0.705530.062
55DAP/53DAP1.099210.939
57DAP/55DAP1.66036
62DAP/57DAP0.76817
68DAP/62DAPN/AN/A
68DAP/14DAP0.20707

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M821.23525
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.845180.71
IL1-4/WTpooled1.976331
WT/WTpooled0.87268

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A