Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.3.3.21

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.17313	0.443
27DAP/17DAP	1.16111	0.809
39DAP/27DAP	1.5299	0.187
41DAP/39DAP	0.84866	0.436
42DAP/41DAP	0.91383	0.774
43DAP/42DAP	0.85284	0.583
47DAP/43DAP	1.05934	0.702
52DAP/47DAP	1.03601	0.96
57DAP/52DAP	1.00694	0.992

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00744	0.787
17DAP/reference	1.0663	0.057
27DAP/reference	1.03531	0.446
39DAP/reference	1.02883	0.132
41DAP/reference	1.03528	0.624
42DAP/reference	0.85712	0.05
43DAP/reference	1.03713	0.569
47DAP/reference	0.96744	0.3
52DAP/reference	0.86924	0.183
57DAP/reference	0.82974	0.112

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.87069	0.228
27DAP/17DAP	1.05221	0.887
39DAP/27DAP	1.13241	0.369
41DAP/39DAP	1.03716	1
42DAP/41DAP	0.9762	0.776
43DAP/42DAP	1.06737	0.382
47DAP/43DAP	0.99334	0.971
52DAP/47DAP	1.30423	0.386
57DAP/52DAP	0.89834	0.422
57DAP/7DAP	0.95717	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.07238	0.385
17DAP/reference	0.86735	0.072
27DAP/reference	0.90677	0.248
39DAP/reference	0.94495	0.23
41DAP/reference	1.02814	1
42DAP/reference	0.81536	0.032
43DAP/reference	0.84318	0.145
47DAP/reference	0.95367	0.504
52DAP/reference	1.00734	0.802
57DAP/reference	1.0544	0.67

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00888	0.943
17DAP/reference	0.97679	0.399
27DAP/reference	0.86799	0.167
39DAP/reference	0.9312	0.306
41DAP/reference	0.97046	0.432
42DAP/reference	0.93385	0.189
43DAP/reference	0.99775	0.831
47DAP/reference	0.96268	0.319
52DAP/reference	0.95241	0.187
57DAP/reference	0.99599	0.789

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96344	0.489
17DAP/reference	0.98817	0.739
27DAP/reference	0.73974	0.05
39DAP/reference	0.88853	0.092
41DAP/reference	0.95074	0.371
42DAP/reference	0.90245	0.287
43DAP/reference	0.91577	0.348
47DAP/reference	0.99331	0.646
52DAP/reference	0.81003	0.22
57DAP/reference	0.90937	0.299

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.96386	1
26DAP/20DAP	0.89629	1
34DAP/26DAP	1.10231	1
51DAP/34DAP	0.92003	0.611
52DAP/51DAP	1.12464	0.579
53DAP/52DAP	1.21425	0.356
55DAP/53DAP	1.10262	0.722
57DAP/55DAP	1.06852	0.906
62DAP/57DAP	1.1111	0.723
68DAP/62DAP	1.18018	0.672
68DAP/14DAP	1.07434	0.739

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.84041	0.175

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.85086	0.318
Mature Green Tomato/Ripe Tomato	0.94253	0.611
Immature Eggplant/Mature Eggplant	0.83231	0.079
Ripe Pepper/Ripe Tomato	0.65952	0.224
Mature Eggplant/Ripe Tomato	1.1303	0.373

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.16251	0.536
1-1-2/M82	1.21649
12-2/M82	1.03709	1
12-4/M82	1.09392	1
1-3/M82	1.16137	0.479
2-1-1/M82	1.27893	0.375
2-1/M82	1.01179	1
2-6/M82	1.0806	0.505
3-2/M82	1.14257	0.84
4-1-1/M82	1.03449	1
4-1/M82	0.94164
4-3-2/M82	0.87537
4-3/M82	1.02691	1
5-3/M82	1.05782	1
6-2/M82	0.94587	1
6-3/M82	1.1009	1
7-1/M82	0.92945	1
7-2/M82	1.16769	0.324
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.5643	0.277
IL2-6/WTpooled	0.81644	1
IL7-5/WTpooled	0.95163	1
IL7-3/WTpooled	0.77761	0.418
IL12-4/WTpooled	1.00664	1
IL1-4/WTpooled	1.23147	1
WT/WTpooled	0.99819	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.02415	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.99792	1
DC3000/delta hrp 6h	1.18441	1
DC3000/delta hrp 12h	0.90658	1
DC3000/delta hrp 24h	1.09432	0.411

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.72237
DC3000 delta B/DC3000 delta AB	1.13351	0.377

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.00194	1
Exp 36h	1.16048	0.489
Exp 60h	1.28206	0.215

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.0128	1
Var 0h	0.51959	0.936
Var 12h I row2-row1	0.84436	0.353
Var 12h NI row2-row1	1.02273	1
Var 36h I row2-row1	0.81391	0.805
Var 36h NI row2-row1	0.80644	0.45
Var 60h I row2-row1	0.8693
Var 60h NI row2-row1	0.85249	0.483
Time course 0hI-0hNI	1.01044	1
Time course 12hI-12hNI	0.94961	0.387
Time course 36hI-36hNI	1.03837	0.128
Time course 60hI-60hNI	1.75347	0.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.98453	0.789
transgenic ySAMdc/azygous control (breaker)	1.09394	1
transgenic ySAMdc/azygous control (red)	1.00014	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.16466	0.041

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.00717	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.82974	0.172
Manapal/WT (break)	0.85903	0.333
Manapal/WT (red)	1.11027	0.222