Expression of 1-1-5.3.3.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80856 | 0.318 |
27DAP/17DAP | 0.80642 | 0.5 |
39DAP/27DAP | 1.03605 | 0.857 |
41DAP/39DAP | 1.15947 | 0.53 |
42DAP/41DAP | 1.07631 | 0.913 |
43DAP/42DAP | 1.0652 | 1 |
47DAP/43DAP | 0.96108 | 0.821 |
52DAP/47DAP | 1.0422 | 0.915 |
57DAP/52DAP | 0.94057 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02869 | 0.96 |
17DAP/reference | 0.6273 | 0.007 |
27DAP/reference | 0.74155 | 0.07 |
39DAP/reference | 0.79386 | 0.013 |
41DAP/reference | 0.64122 | 0.009 |
42DAP/reference | 0.95273 | 0.337 |
43DAP/reference | 0.74256 | |
47DAP/reference | 1.13681 | 0.524 |
52DAP/reference | 1.92882 | 0.017 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24032 | 0.083 |
27DAP/17DAP | 1.17458 | 0.37 |
39DAP/27DAP | 0.97427 | 0.833 |
41DAP/39DAP | 0.95454 | 0.875 |
42DAP/41DAP | 1.21181 | 0.208 |
43DAP/42DAP | 0.91963 | 0.482 |
47DAP/43DAP | 1.0819 | 0.772 |
52DAP/47DAP | 1.09083 | 0.718 |
57DAP/52DAP | 1.0593 | 0.783 |
57DAP/7DAP | 1.19079 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14512 | 0.6 |
17DAP/reference | 0.94 | 0.167 |
27DAP/reference | 1.12955 | 0.197 |
39DAP/reference | 0.97735 | 0.474 |
41DAP/reference | 1.04179 | 0.836 |
42DAP/reference | 1.34487 | 0.174 |
43DAP/reference | 1.25614 | 0.048 |
47DAP/reference | 1.7983 | 0.014 |
52DAP/reference | 1.36736 | 0.019 |
57DAP/reference | 1.13198 | 0.076 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04863 | 0.93 |
17DAP/reference | 0.65807 | 0.024 |
27DAP/reference | 1.45642 | 0.217 |
39DAP/reference | 1.18955 | 0.806 |
41DAP/reference | 1.14964 | 0.657 |
42DAP/reference | 1.35484 | 0.041 |
43DAP/reference | 0.91137 | 0.336 |
47DAP/reference | 1.18775 | 0.413 |
52DAP/reference | 0.72476 | 0.003 |
57DAP/reference | 0.56567 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09481 | 0.793 |
17DAP/reference | 0.8865 | 0.389 |
27DAP/reference | 1.12624 | 0.085 |
39DAP/reference | 1.35595 | 0.024 |
41DAP/reference | 0.97786 | 0.459 |
42DAP/reference | 1.4365 | 0.06 |
43DAP/reference | 1.66852 | 0.087 |
47DAP/reference | 0.77572 | 0.049 |
52DAP/reference | 1.3697 | 0.153 |
57DAP/reference | 3.44397 | 0.006 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 2.97513 | 1 |
26DAP/20DAP | 1.30179 | 0.437 |
34DAP/26DAP | 0.84485 | 0.121 |
51DAP/34DAP | 2.33668 | 0.025 |
52DAP/51DAP | 0.93342 | 1 |
53DAP/52DAP | 1.31879 | 0.274 |
55DAP/53DAP | 0.74443 | 0.149 |
57DAP/55DAP | 0.72296 | 0.096 |
62DAP/57DAP | 0.71664 | 0.002 |
68DAP/62DAP | 1.48871 | 0.316 |
68DAP/14DAP | 2.33135 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.26988 | 0.306 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.85429 | 0.323 |
Mature Green Tomato/Ripe Tomato | 1.36584 | 0.064 |
Immature Eggplant/Mature Eggplant | 1.87805 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.15987 | 1 |
Mature Eggplant/Ripe Tomato | 0.70659 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92777 | |
1-1-2/M82 | 1.89253 | |
12-2/M82 | 1.19203 | 1 |
12-4/M82 | 0.92831 | 1 |
1-3/M82 | 2.31935 | 0.255 |
2-1-1/M82 | 0.78342 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.77857 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.67259 | 1 |
4-1/M82 | 0.52985 | |
4-3-2/M82 | 0.98725 | 1 |
4-3/M82 | 1.13329 | 0.268 |
5-3/M82 | 1.18353 | 0.572 |
6-2/M82 | 1.00953 | |
6-3/M82 | 0.86319 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.32977 | |
9-3-2/M82 | 0.81651 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95678 | 1 |
IL2-6/WTpooled | 0.72797 | 0.383 |
IL7-5/WTpooled | 0.77858 | |
IL7-3/WTpooled | 1.08475 | 1 |
IL12-4/WTpooled | 1.04097 | 0.839 |
IL1-4/WTpooled | 0.94841 | 1 |
WT/WTpooled | 1.06641 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.10028 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01461 | 0.921 |
DC3000/delta hrp 6h | 0.96351 | 0.95 |
DC3000/delta hrp 12h | 1.02887 | 1 |
DC3000/delta hrp 24h | 0.75835 | 0.087 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.34793 | |
DC3000 delta B/DC3000 delta AB | 1.3273 | 0.151 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12432 | 1 |
Exp 36h | 1.44024 | 0.693 |
Exp 60h | 1.45256 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99041 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.9778 | |
Var 12h NI row2-row1 | 0.97105 | |
Var 36h I row2-row1 | 1.21446 | 0.309 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 0.97208 | 0.903 |
Time course 12hI-12hNI | 1.10207 | 0.327 |
Time course 36hI-36hNI | 1.15049 | 0.056 |
Time course 60hI-60hNI | 1.74284 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.80445 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 0.66134 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.94686 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14743 | 0.086 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.72981 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.05613 | 1 |
Manapal/WT (break) | 1.36605 | 0.183 |
Manapal/WT (red) | 1.03307 | 1 |
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