Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.3.3.7

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.54616	0.059
27DAP/17DAP	1.9177	0.9
39DAP/27DAP	2.03724	0.135
41DAP/39DAP	1.72992	0.298
42DAP/41DAP	0.89799	1
43DAP/42DAP	0.93902	0.909
47DAP/43DAP	1.23128	1
52DAP/47DAP	1.25376	0.945
57DAP/52DAP	1.18386	0.992

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.83717	0.034
17DAP/reference	1.66727	0.068
27DAP/reference	2.5015	0.007
39DAP/reference	0.39425
41DAP/reference	1.1102
42DAP/reference	1.26519	0.001
43DAP/reference	1.31808	0.678
47DAP/reference	N/A	N/A
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.88006
27DAP/17DAP	1.67405
39DAP/27DAP	0.65234
41DAP/39DAP	N/A	N/A
42DAP/41DAP	0.82281	0.382
43DAP/42DAP	N/A	N/A
47DAP/43DAP	1.40794
52DAP/47DAP	N/A	N/A
57DAP/52DAP	1.90912	0.171
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.63864	0.076
17DAP/reference	0.57139	0.011
27DAP/reference	0.60959	0.01
39DAP/reference	0.3371	0.011
41DAP/reference	0.27469	0.011
42DAP/reference	0.36195	0.01
43DAP/reference	0.32477	0.009
47DAP/reference	0.67849	0.293
52DAP/reference	0.27142	0.009
57DAP/reference	0.32806	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.83739	0.397
17DAP/reference	3.45206	0.007
27DAP/reference	1.65005	0.303
39DAP/reference	1.23849	0.602
41DAP/reference	1.32684	0.416
42DAP/reference	1.51648	0.009
43DAP/reference	0.63804	0.064
47DAP/reference	1.15667	0.867
52DAP/reference	0.88375	0.407
57DAP/reference	0.89331	0.226

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.26936	0.042
17DAP/reference	0.99089	0.739
27DAP/reference	0.98772	0.691
39DAP/reference	0.6118	0.009
41DAP/reference	0.46398	0.018
42DAP/reference	0.85208	0.22
43DAP/reference	0.60478	0.052
47DAP/reference	1.70032	0.007
52DAP/reference	0.41748	0.047
57DAP/reference	1.23802	0.481

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	3.00267	0.335
26DAP/20DAP	1.09787
34DAP/26DAP	N/A	N/A
51DAP/34DAP	3.31146	0.352
52DAP/51DAP	1.57043
53DAP/52DAP	1.14661	1
55DAP/53DAP	1.97754	0.341
57DAP/55DAP	N/A	N/A
62DAP/57DAP	1.34685	0.8
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.58973	0.285

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	87.4047
Mature Eggplant/Ripe Tomato	39.4136	0.26

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	0.50326
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	0.9941
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	0.95823
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	1.052
IL7-3/WTpooled	0.95808
IL12-4/WTpooled	1.14065	0.891
IL1-4/WTpooled	1.33651	1
WT/WTpooled	1.00181	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.99458	1
DC3000/delta hrp 6h	1.23016	1
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	0.51636	0.052

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.88233
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.25671	0.034

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A