Expression of 1-1-5.3.3.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.872360.381
27DAP/17DAP0.919040.833
39DAP/27DAP1.137960.944
41DAP/39DAP1.023740.883
42DAP/41DAP0.82660.774
43DAP/42DAP1.035581
47DAP/43DAP1.014640.979
52DAP/47DAP1.643110.851
57DAP/52DAP1.058181

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.29820.028
17DAP/reference0.860950.031
27DAP/reference0.884420.359
39DAP/reference0.666090.025
41DAP/reference0.75970.085
42DAP/reference0.893380.218
43DAP/referenceN/AN/A
47DAP/reference0.57989
52DAP/reference0.996160.709
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.995590.782
27DAP/17DAP1.131860.863
39DAP/27DAP0.95150.712
41DAP/39DAP0.945490.822
42DAP/41DAP1.004380.85
43DAP/42DAP1.079560.746
47DAP/43DAP1.163380.262
52DAP/47DAP0.94180.777
57DAP/52DAP1.296810.188
57DAP/7DAP0.75365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914890.224
17DAP/reference0.898560.108
27DAP/reference0.938470.231
39DAP/reference0.98380.552
41DAP/reference1.057290.637
42DAP/reference0.959210.32
43DAP/reference0.98790.58
47DAP/reference0.8460.168
52DAP/reference0.852490.031
57DAP/reference0.804050.021

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.208970.102
17DAP/reference1.125020.06
27DAP/reference1.229450.116
39DAP/reference1.227590.109
41DAP/reference1.171430.072
42DAP/reference1.090430.715
43DAP/reference0.80730.117
47DAP/reference0.965080.359
52DAP/reference1.181780.079
57DAP/reference1.068961

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910520.049
17DAP/reference0.952610.499
27DAP/reference0.868690.067
39DAP/reference0.869670.063
41DAP/reference0.86850.107
42DAP/reference0.966540.671
43DAP/reference1.161070.369
47DAP/reference0.975030.525
52DAP/reference1.096750.705
57DAP/reference2.130050.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.234150.966
26DAP/20DAP2.389860.098
34DAP/26DAP0.706790.148
51DAP/34DAP1.219760.339
52DAP/51DAPN/AN/A
53DAP/52DAP1.214760.274
55DAP/53DAP0.945880.807
57DAP/55DAP1.114390.817
62DAP/57DAP0.964860.994
68DAP/62DAP1.123870.759
68DAP/14DAP1.463220.453

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.189950.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.271380.363
Immature Eggplant/Mature Eggplant3.81775
Ripe Pepper/Ripe Tomato0.238540.224
Mature Eggplant/Ripe Tomato0.823641

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.9951
1-1-2/M821.496961
12-2/M82N/AN/A
12-4/M820.95631
1-3/M821.22129
2-1-1/M821.244350.764
2-1/M82N/AN/A
2-6/M820.94037
3-2/M820.99957
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.78904
4-3/M821.1139
5-3/M820.836320.49
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.38723
7-2/M821.179310.302
9-3-2/M821.231210.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.090410.493
IL2-6/WTpooled1.01151
IL7-5/WTpooled0.88481
IL7-3/WTpooled1.239881
IL12-4/WTpooled1.272050.624
IL1-4/WTpooled1.19551
WT/WTpooled0.701241

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.919490.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.154650.692
DC3000/delta hrp 6h1.068691
DC3000/delta hrp 12h0.890371
DC3000/delta hrp 24h1.004031

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.26412
DC3000 delta B/DC3000 delta AB1.238110.181

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.993571
Exp 36h0.856610.661
Exp 60h0.73860.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010861
Var 0h0.72321
Var 12h I row2-row11.341970.58
Var 12h NI row2-row11.209680.161
Var 36h I row2-row11.139010.601
Var 36h NI row2-row11.160981
Var 60h I row2-row10.76804
Var 60h NI row2-row10.950331
Time course 0hI-0hNI0.972470.9
Time course 12hI-12hNI1.120.287
Time course 36hI-36hNI1.183650.218
Time course 60hI-60hNI1.345520.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.305250.372
transgenic ySAMdc/azygous control (breaker)0.833070.251
transgenic ySAMdc/azygous control (red)1.010070.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.99480.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.294880.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.02411
Manapal/WT (break)1.074261
Manapal/WT (red)1.114910.413