Expression of 1-1-5.3.3.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87236 | 0.381 |
27DAP/17DAP | 0.91904 | 0.833 |
39DAP/27DAP | 1.13796 | 0.944 |
41DAP/39DAP | 1.02374 | 0.883 |
42DAP/41DAP | 0.8266 | 0.774 |
43DAP/42DAP | 1.03558 | 1 |
47DAP/43DAP | 1.01464 | 0.979 |
52DAP/47DAP | 1.64311 | 0.851 |
57DAP/52DAP | 1.05818 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2982 | 0.028 |
17DAP/reference | 0.86095 | 0.031 |
27DAP/reference | 0.88442 | 0.359 |
39DAP/reference | 0.66609 | 0.025 |
41DAP/reference | 0.7597 | 0.085 |
42DAP/reference | 0.89338 | 0.218 |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.57989 | |
52DAP/reference | 0.99616 | 0.709 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99559 | 0.782 |
27DAP/17DAP | 1.13186 | 0.863 |
39DAP/27DAP | 0.9515 | 0.712 |
41DAP/39DAP | 0.94549 | 0.822 |
42DAP/41DAP | 1.00438 | 0.85 |
43DAP/42DAP | 1.07956 | 0.746 |
47DAP/43DAP | 1.16338 | 0.262 |
52DAP/47DAP | 0.9418 | 0.777 |
57DAP/52DAP | 1.29681 | 0.188 |
57DAP/7DAP | 0.75365 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91489 | 0.224 |
17DAP/reference | 0.89856 | 0.108 |
27DAP/reference | 0.93847 | 0.231 |
39DAP/reference | 0.9838 | 0.552 |
41DAP/reference | 1.05729 | 0.637 |
42DAP/reference | 0.95921 | 0.32 |
43DAP/reference | 0.9879 | 0.58 |
47DAP/reference | 0.846 | 0.168 |
52DAP/reference | 0.85249 | 0.031 |
57DAP/reference | 0.80405 | 0.021 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20897 | 0.102 |
17DAP/reference | 1.12502 | 0.06 |
27DAP/reference | 1.22945 | 0.116 |
39DAP/reference | 1.22759 | 0.109 |
41DAP/reference | 1.17143 | 0.072 |
42DAP/reference | 1.09043 | 0.715 |
43DAP/reference | 0.8073 | 0.117 |
47DAP/reference | 0.96508 | 0.359 |
52DAP/reference | 1.18178 | 0.079 |
57DAP/reference | 1.06896 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91052 | 0.049 |
17DAP/reference | 0.95261 | 0.499 |
27DAP/reference | 0.86869 | 0.067 |
39DAP/reference | 0.86967 | 0.063 |
41DAP/reference | 0.8685 | 0.107 |
42DAP/reference | 0.96654 | 0.671 |
43DAP/reference | 1.16107 | 0.369 |
47DAP/reference | 0.97503 | 0.525 |
52DAP/reference | 1.09675 | 0.705 |
57DAP/reference | 2.13005 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.23415 | 0.966 |
26DAP/20DAP | 2.38986 | 0.098 |
34DAP/26DAP | 0.70679 | 0.148 |
51DAP/34DAP | 1.21976 | 0.339 |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 1.21476 | 0.274 |
55DAP/53DAP | 0.94588 | 0.807 |
57DAP/55DAP | 1.11439 | 0.817 |
62DAP/57DAP | 0.96486 | 0.994 |
68DAP/62DAP | 1.12387 | 0.759 |
68DAP/14DAP | 1.46322 | 0.453 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18995 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.27138 | 0.363 |
Immature Eggplant/Mature Eggplant | 3.81775 | |
Ripe Pepper/Ripe Tomato | 0.23854 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.82364 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9951 | |
1-1-2/M82 | 1.49696 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.9563 | 1 |
1-3/M82 | 1.22129 | |
2-1-1/M82 | 1.24435 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.94037 | |
3-2/M82 | 0.99957 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.78904 | |
4-3/M82 | 1.1139 | |
5-3/M82 | 0.83632 | 0.49 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.38723 | |
7-2/M82 | 1.17931 | 0.302 |
9-3-2/M82 | 1.23121 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.09041 | 0.493 |
IL2-6/WTpooled | 1.0115 | 1 |
IL7-5/WTpooled | 0.8848 | 1 |
IL7-3/WTpooled | 1.23988 | 1 |
IL12-4/WTpooled | 1.27205 | 0.624 |
IL1-4/WTpooled | 1.1955 | 1 |
WT/WTpooled | 0.70124 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91949 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.15465 | 0.692 |
DC3000/delta hrp 6h | 1.06869 | 1 |
DC3000/delta hrp 12h | 0.89037 | 1 |
DC3000/delta hrp 24h | 1.00403 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.26412 | |
DC3000 delta B/DC3000 delta AB | 1.23811 | 0.181 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99357 | 1 |
Exp 36h | 0.85661 | 0.661 |
Exp 60h | 0.7386 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01086 | 1 |
Var 0h | 0.72321 | |
Var 12h I row2-row1 | 1.34197 | 0.58 |
Var 12h NI row2-row1 | 1.20968 | 0.161 |
Var 36h I row2-row1 | 1.13901 | 0.601 |
Var 36h NI row2-row1 | 1.16098 | 1 |
Var 60h I row2-row1 | 0.76804 | |
Var 60h NI row2-row1 | 0.95033 | 1 |
Time course 0hI-0hNI | 0.97247 | 0.9 |
Time course 12hI-12hNI | 1.12 | 0.287 |
Time course 36hI-36hNI | 1.18365 | 0.218 |
Time course 60hI-60hNI | 1.34552 | 0.037 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.30525 | 0.372 |
transgenic ySAMdc/azygous control (breaker) | 0.83307 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.01007 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9948 | 0.806 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.29488 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0241 | 1 |
Manapal/WT (break) | 1.07426 | 1 |
Manapal/WT (red) | 1.11491 | 0.413 |
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