Expression of 1-1-5.3.5.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90176 | 0.464 |
27DAP/17DAP | 0.4812 | 0.027 |
39DAP/27DAP | 0.84477 | 0.507 |
41DAP/39DAP | 0.89838 | 0.591 |
42DAP/41DAP | 0.75202 | 0.774 |
43DAP/42DAP | 1.11178 | 1 |
47DAP/43DAP | 0.91241 | 0.667 |
52DAP/47DAP | 1.19186 | 0.67 |
57DAP/52DAP | 0.85271 | 0.869 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91336 | 0.308 |
17DAP/reference | 1.01004 | 1 |
27DAP/reference | 1.06101 | 0.529 |
39DAP/reference | 1.13949 | 0.318 |
41DAP/reference | 0.97436 | 0.667 |
42DAP/reference | 0.84555 | 0.035 |
43DAP/reference | 0.97308 | 0.594 |
47DAP/reference | 0.95758 | 0.322 |
52DAP/reference | 1.11757 | 0.498 |
57DAP/reference | 1.13359 | 0.024 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04625 | 0.797 |
27DAP/17DAP | 0.88383 | 0.648 |
39DAP/27DAP | 0.60063 | 0.033 |
41DAP/39DAP | 1.12826 | 0.417 |
42DAP/41DAP | 0.81247 | 0.034 |
43DAP/42DAP | 0.68598 | 0.022 |
47DAP/43DAP | 1.2454 | 0.713 |
52DAP/47DAP | 1.042 | 0.919 |
57DAP/52DAP | 0.9091 | 0.366 |
57DAP/7DAP | 0.40372 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85836 | 0.146 |
17DAP/reference | 0.99083 | 0.599 |
27DAP/reference | 1.08544 | 0.453 |
39DAP/reference | 0.94744 | 0.354 |
41DAP/reference | 1.06316 | 1 |
42DAP/reference | 1.12489 | 0.233 |
43DAP/reference | 1.05407 | 0.974 |
47DAP/reference | 1.03114 | 0.901 |
52DAP/reference | 0.91835 | 0.15 |
57DAP/reference | 0.80216 | 0.057 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32236 | 0.043 |
17DAP/reference | 0.91689 | 0.422 |
27DAP/reference | 1.11938 | 0.38 |
39DAP/reference | 1.0533 | 0.935 |
41DAP/reference | 0.97815 | 0.519 |
42DAP/reference | 1.14506 | 0.166 |
43DAP/reference | 1.30094 | 0.047 |
47DAP/reference | 1.05097 | 0.994 |
52DAP/reference | 1.31097 | 0.124 |
57DAP/reference | 0.81728 | 0.243 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91503 | 0.29 |
17DAP/reference | 0.88258 | 0.239 |
27DAP/reference | 1.13065 | 0.425 |
39DAP/reference | 1.06486 | 0.512 |
41DAP/reference | 1.00921 | 0.826 |
42DAP/reference | 1.0057 | 1 |
43DAP/reference | 0.97928 | 0.614 |
47DAP/reference | 1.17377 | 0.934 |
52DAP/reference | 1.29395 | 0.268 |
57DAP/reference | 1.33354 | 0.171 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95152 | 1 |
26DAP/20DAP | 0.91131 | 0.512 |
34DAP/26DAP | 0.8848 | 0.712 |
51DAP/34DAP | 1.04721 | 0.829 |
52DAP/51DAP | 0.77561 | 1 |
53DAP/52DAP | 1.15178 | 0.688 |
55DAP/53DAP | 0.83552 | 0.404 |
57DAP/55DAP | 1.70327 | 0.694 |
62DAP/57DAP | 1.50919 | 0.569 |
68DAP/62DAP | 1.19174 | 1 |
68DAP/14DAP | 2.57467 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85099 | 0.253 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 8.57343 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.56033 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.95451 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.06364 | 1 |
IL12-4/WTpooled | 0.91233 | 0.71 |
IL1-4/WTpooled | 0.99021 | 1 |
WT/WTpooled | 0.98984 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.30553 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.83854 | |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.8901 | 1 |
DC3000/delta hrp 24h | 1.3647 | 0.453 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.36815 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.38497 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98631 | 1 |
Exp 36h | 0.54388 | 0.406 |
Exp 60h | 0.69116 | 0.32 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95336 | 1 |
Var 0h | 1.06435 | 0.305 |
Var 12h I row2-row1 | 0.65611 | 0.338 |
Var 12h NI row2-row1 | 0.92231 | 0.488 |
Var 36h I row2-row1 | 0.84509 | 0.575 |
Var 36h NI row2-row1 | 1.00752 | 1 |
Var 60h I row2-row1 | 1.76894 | 0.543 |
Var 60h NI row2-row1 | 0.97372 | 1 |
Time course 0hI-0hNI | 0.98429 | 0.961 |
Time course 12hI-12hNI | 1.00727 | 0.854 |
Time course 36hI-36hNI | 0.87724 | 0.023 |
Time course 60hI-60hNI | 0.11734 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01604 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.96412 | 1 |
transgenic ySAMdc/azygous control (red) | 1.16235 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00069 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.30581 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.26811 | 0.096 |
Manapal/WT (break) | 0.88179 | 1 |
Manapal/WT (red) | 1.13993 | 0.413 |
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