Expression of 1-1-5.3.5.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.901760.464
27DAP/17DAP0.48120.027
39DAP/27DAP0.844770.507
41DAP/39DAP0.898380.591
42DAP/41DAP0.752020.774
43DAP/42DAP1.111781
47DAP/43DAP0.912410.667
52DAP/47DAP1.191860.67
57DAP/52DAP0.852710.869

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.913360.308
17DAP/reference1.010041
27DAP/reference1.061010.529
39DAP/reference1.139490.318
41DAP/reference0.974360.667
42DAP/reference0.845550.035
43DAP/reference0.973080.594
47DAP/reference0.957580.322
52DAP/reference1.117570.498
57DAP/reference1.133590.024

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.046250.797
27DAP/17DAP0.883830.648
39DAP/27DAP0.600630.033
41DAP/39DAP1.128260.417
42DAP/41DAP0.812470.034
43DAP/42DAP0.685980.022
47DAP/43DAP1.24540.713
52DAP/47DAP1.0420.919
57DAP/52DAP0.90910.366
57DAP/7DAP0.403720.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.858360.146
17DAP/reference0.990830.599
27DAP/reference1.085440.453
39DAP/reference0.947440.354
41DAP/reference1.063161
42DAP/reference1.124890.233
43DAP/reference1.054070.974
47DAP/reference1.031140.901
52DAP/reference0.918350.15
57DAP/reference0.802160.057

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.322360.043
17DAP/reference0.916890.422
27DAP/reference1.119380.38
39DAP/reference1.05330.935
41DAP/reference0.978150.519
42DAP/reference1.145060.166
43DAP/reference1.300940.047
47DAP/reference1.050970.994
52DAP/reference1.310970.124
57DAP/reference0.817280.243

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.915030.29
17DAP/reference0.882580.239
27DAP/reference1.130650.425
39DAP/reference1.064860.512
41DAP/reference1.009210.826
42DAP/reference1.00571
43DAP/reference0.979280.614
47DAP/reference1.173770.934
52DAP/reference1.293950.268
57DAP/reference1.333540.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.951521
26DAP/20DAP0.911310.512
34DAP/26DAP0.88480.712
51DAP/34DAP1.047210.829
52DAP/51DAP0.775611
53DAP/52DAP1.151780.688
55DAP/53DAP0.835520.404
57DAP/55DAP1.703270.694
62DAP/57DAP1.509190.569
68DAP/62DAP1.191741
68DAP/14DAP2.57467

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.850990.253

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato8.573430.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.56033
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.954511
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.063641
IL12-4/WTpooled0.912330.71
IL1-4/WTpooled0.990211
WT/WTpooled0.989841

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.305531

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.83854
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.89011
DC3000/delta hrp 24h1.36470.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.368150.023
DC3000 delta B/DC3000 delta AB0.384970.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.986311
Exp 36h0.543880.406
Exp 60h0.691160.32

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.953361
Var 0h1.064350.305
Var 12h I row2-row10.656110.338
Var 12h NI row2-row10.922310.488
Var 36h I row2-row10.845090.575
Var 36h NI row2-row11.007521
Var 60h I row2-row11.768940.543
Var 60h NI row2-row10.973721
Time course 0hI-0hNI0.984290.961
Time course 12hI-12hNI1.007270.854
Time course 36hI-36hNI0.877240.023
Time course 60hI-60hNI0.117340.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.016041
transgenic ySAMdc/azygous control (breaker)0.964121
transgenic ySAMdc/azygous control (red)1.162350.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.000691

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.305811

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.268110.096
Manapal/WT (break)0.881791
Manapal/WT (red)1.139930.413