Expression of 1-1-5.3.6.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04198 | 1 |
27DAP/17DAP | 1.28694 | 0.845 |
39DAP/27DAP | 1.44615 | 0.384 |
41DAP/39DAP | 1.07711 | 0.938 |
42DAP/41DAP | 1.23985 | 0.672 |
43DAP/42DAP | 0.86921 | 0.583 |
47DAP/43DAP | 1.22965 | 0.267 |
52DAP/47DAP | 1.13212 | 0.918 |
57DAP/52DAP | 1.10676 | 0.892 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80132 | 0.08 |
17DAP/reference | 0.82363 | 0.029 |
27DAP/reference | 0.83194 | 0.018 |
39DAP/reference | 1.05488 | 0.903 |
41DAP/reference | 0.84587 | 0.026 |
42DAP/reference | 1.74754 | 0.001 |
43DAP/reference | 1.51475 | 0.007 |
47DAP/reference | 1.7784 | 0.001 |
52DAP/reference | 1.39123 | 0.019 |
57DAP/reference | 1.34751 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03733 | 1 |
27DAP/17DAP | 1.14062 | 0.735 |
39DAP/27DAP | 1.02541 | 1 |
41DAP/39DAP | 1.21182 | 0.304 |
42DAP/41DAP | 0.89293 | 0.524 |
43DAP/42DAP | 1.05163 | 0.83 |
47DAP/43DAP | 1.05321 | 0.772 |
52DAP/47DAP | 1.45598 | 0.201 |
57DAP/52DAP | 1.72399 | 0.044 |
57DAP/7DAP | 13.1407 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.62706 | 0.071 |
17DAP/reference | 0.87121 | 0.192 |
27DAP/reference | 0.7703 | 0.135 |
39DAP/reference | 1.15564 | 0.64 |
41DAP/reference | 1.16981 | 0.475 |
42DAP/reference | 1.1363 | 0.889 |
43DAP/reference | 0.92823 | 0.202 |
47DAP/reference | 1.55312 | 0.052 |
52DAP/reference | 1.23739 | 0.352 |
57DAP/reference | 1.05214 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76384 | 0.016 |
17DAP/reference | 0.8156 | 0.015 |
27DAP/reference | 1.02793 | 0.79 |
39DAP/reference | 1.19337 | 0.164 |
41DAP/reference | 1.34589 | 0.006 |
42DAP/reference | 1.35875 | 0.046 |
43DAP/reference | 0.92054 | 0.378 |
47DAP/reference | 1.64814 | 0.009 |
52DAP/reference | 0.89629 | 0.101 |
57DAP/reference | 0.85311 | 0.085 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05587 | 0.804 |
17DAP/reference | 0.82767 | 0.132 |
27DAP/reference | 0.7209 | 0.302 |
39DAP/reference | 0.94376 | 0.464 |
41DAP/reference | 0.99408 | 0.754 |
42DAP/reference | 1.18884 | 0.154 |
43DAP/reference | 1.34916 | 0.102 |
47DAP/reference | 1.66367 | 0.006 |
52DAP/reference | 0.91038 | 0.444 |
57DAP/reference | 1.82298 | 0.005 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9654 | 1 |
26DAP/20DAP | 0.96364 | 1 |
34DAP/26DAP | 0.92617 | 0.927 |
51DAP/34DAP | 0.88335 | 0.492 |
52DAP/51DAP | 1.24351 | 0.158 |
53DAP/52DAP | 1.30703 | |
55DAP/53DAP | 0.69017 | 0.091 |
57DAP/55DAP | 1.01151 | 0.935 |
62DAP/57DAP | 0.85805 | 0.681 |
68DAP/62DAP | 1.40254 | 0.093 |
68DAP/14DAP | 2.2266 | 0.025 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.06703 | 0.855 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.64225 | 0.161 |
Mature Green Tomato/Ripe Tomato | 0.44395 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.30651 | 0.053 |
Ripe Pepper/Ripe Tomato | 0.42303 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.59108 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11011 | |
1-1-2/M82 | 1.02141 | 1 |
12-2/M82 | 1.51273 | |
12-4/M82 | 0.95007 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.30614 | |
2-1/M82 | 1.11819 | |
2-6/M82 | 0.80533 | |
3-2/M82 | 1.39847 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.15743 | 1 |
5-3/M82 | 0.93999 | 1 |
6-2/M82 | 2.09093 | 0.253 |
6-3/M82 | 0.85562 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.11447 | 1 |
IL2-6/WTpooled | 0.73368 | 1 |
IL7-5/WTpooled | 0.74028 | |
IL7-3/WTpooled | 1.19132 | 1 |
IL12-4/WTpooled | 1.14597 | 0.737 |
IL1-4/WTpooled | 0.86819 | |
WT/WTpooled | 0.94738 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03414 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.83761 | 1 |
DC3000/delta hrp 6h | 0.96537 | 0.95 |
DC3000/delta hrp 12h | 1.11221 | 1 |
DC3000/delta hrp 24h | 2.20333 | 0.026 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12613 | 1 |
DC3000 delta B/DC3000 delta AB | 1.37357 | 0.147 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1158 | 1 |
Exp 36h | 1.08821 | 1 |
Exp 60h | 1.19892 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06646 | 1 |
Var 0h | 1.00687 | 1 |
Var 12h I row2-row1 | 1.07527 | 0.506 |
Var 12h NI row2-row1 | 1.03523 | 1 |
Var 36h I row2-row1 | 0.92263 | 1 |
Var 36h NI row2-row1 | 0.9267 | 0.706 |
Var 60h I row2-row1 | 0.83984 | 0.285 |
Var 60h NI row2-row1 | 1.04127 | 0.904 |
Time course 0hI-0hNI | 1.03647 | 1 |
Time course 12hI-12hNI | 1.33818 | 0.008 |
Time course 36hI-36hNI | 1.40819 | 0.017 |
Time course 60hI-60hNI | 2.9393 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0642 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 0.97199 | 1 |
transgenic ySAMdc/azygous control (red) | 1.23823 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.18039 | 0.1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81945 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.96504 | 1 |
Manapal/WT (break) | 1.0161 | 1 |
Manapal/WT (red) | 0.9824 | 0.863 |
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