Expression of 1-1-5.3.6.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.041981
27DAP/17DAP1.286940.845
39DAP/27DAP1.446150.384
41DAP/39DAP1.077110.938
42DAP/41DAP1.239850.672
43DAP/42DAP0.869210.583
47DAP/43DAP1.229650.267
52DAP/47DAP1.132120.918
57DAP/52DAP1.106760.892

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.801320.08
17DAP/reference0.823630.029
27DAP/reference0.831940.018
39DAP/reference1.054880.903
41DAP/reference0.845870.026
42DAP/reference1.747540.001
43DAP/reference1.514750.007
47DAP/reference1.77840.001
52DAP/reference1.391230.019
57DAP/reference1.347510.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.037331
27DAP/17DAP1.140620.735
39DAP/27DAP1.025411
41DAP/39DAP1.211820.304
42DAP/41DAP0.892930.524
43DAP/42DAP1.051630.83
47DAP/43DAP1.053210.772
52DAP/47DAP1.455980.201
57DAP/52DAP1.723990.044
57DAP/7DAP13.14071

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.627060.071
17DAP/reference0.871210.192
27DAP/reference0.77030.135
39DAP/reference1.155640.64
41DAP/reference1.169810.475
42DAP/reference1.13630.889
43DAP/reference0.928230.202
47DAP/reference1.553120.052
52DAP/reference1.237390.352
57DAP/reference1.052141

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.763840.016
17DAP/reference0.81560.015
27DAP/reference1.027930.79
39DAP/reference1.193370.164
41DAP/reference1.345890.006
42DAP/reference1.358750.046
43DAP/reference0.920540.378
47DAP/reference1.648140.009
52DAP/reference0.896290.101
57DAP/reference0.853110.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.055870.804
17DAP/reference0.827670.132
27DAP/reference0.72090.302
39DAP/reference0.943760.464
41DAP/reference0.994080.754
42DAP/reference1.188840.154
43DAP/reference1.349160.102
47DAP/reference1.663670.006
52DAP/reference0.910380.444
57DAP/reference1.822980.005

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.96541
26DAP/20DAP0.963641
34DAP/26DAP0.926170.927
51DAP/34DAP0.883350.492
52DAP/51DAP1.243510.158
53DAP/52DAP1.30703
55DAP/53DAP0.690170.091
57DAP/55DAP1.011510.935
62DAP/57DAP0.858050.681
68DAP/62DAP1.402540.093
68DAP/14DAP2.22660.025

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.067030.855

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.642250.161
Mature Green Tomato/Ripe Tomato0.443950.017
Immature Eggplant/Mature Eggplant1.306510.053
Ripe Pepper/Ripe Tomato0.423030.224
Mature Eggplant/Ripe Tomato0.591081

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.11011
1-1-2/M821.021411
12-2/M821.51273
12-4/M820.950071
1-3/M82N/AN/A
2-1-1/M821.30614
2-1/M821.11819
2-6/M820.80533
3-2/M821.39847
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.157431
5-3/M820.939991
6-2/M822.090930.253
6-3/M820.855621
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.114471
IL2-6/WTpooled0.733681
IL7-5/WTpooled0.74028
IL7-3/WTpooled1.191321
IL12-4/WTpooled1.145970.737
IL1-4/WTpooled0.86819
WT/WTpooled0.947381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.034141

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.837611
DC3000/delta hrp 6h0.965370.95
DC3000/delta hrp 12h1.112211
DC3000/delta hrp 24h2.203330.026

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.126131
DC3000 delta B/DC3000 delta AB1.373570.147

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.11581
Exp 36h1.088211
Exp 60h1.198920.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.066461
Var 0h1.006871
Var 12h I row2-row11.075270.506
Var 12h NI row2-row11.035231
Var 36h I row2-row10.922631
Var 36h NI row2-row10.92670.706
Var 60h I row2-row10.839840.285
Var 60h NI row2-row11.041270.904
Time course 0hI-0hNI1.036471
Time course 12hI-12hNI1.338180.008
Time course 36hI-36hNI1.408190.017
Time course 60hI-60hNI2.93930.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.06420.612
transgenic ySAMdc/azygous control (breaker)0.971991
transgenic ySAMdc/azygous control (red)1.238230.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.180390.1

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.819450.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.965041
Manapal/WT (break)1.01611
Manapal/WT (red)0.98240.863