Expression of 1-1-5.3.6.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.756840.153
27DAP/17DAP1.056311
39DAP/27DAP0.884860.573
41DAP/39DAP1.614320.376
42DAP/41DAP1.091051
43DAP/42DAP0.801030.554
47DAP/43DAP0.906660.667
52DAP/47DAP2.148270.188
57DAP/52DAP0.73610.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.114750.197
17DAP/reference0.972950.63
27DAP/reference0.970020.552
39DAP/reference0.966580.6
41DAP/reference1.083370.032
42DAP/reference1.080350.012
43DAP/reference1.065880.163
47DAP/reference1.017771
52DAP/reference0.976040.449
57DAP/reference1.03360.582

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.833460.238
27DAP/17DAP0.9890.919
39DAP/27DAP1.051540.758
41DAP/39DAP1.08050.914
42DAP/41DAP0.962770.712
43DAP/42DAP1.022271
47DAP/43DAP1.082680.848
52DAP/47DAP0.988270.925
57DAP/52DAP0.925370.511
57DAP/7DAP1.03271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.854370.104
17DAP/reference0.858640.025
27DAP/reference0.835040.01
39DAP/reference0.837550.011
41DAP/reference0.861640.036
42DAP/reference0.846930.05
43DAP/reference0.775240.029
47DAP/reference0.886060.101
52DAP/reference0.855710.012
57DAP/reference0.80890.019

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.115580.203
17DAP/reference1.120930.117
27DAP/reference1.082710.902
39DAP/reference1.028240.824
41DAP/reference1.008071
42DAP/reference1.033960.843
43DAP/reference1.377260.063
47DAP/reference0.989870.543
52DAP/reference1.108220.069
57DAP/reference1.335640.023

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.885640.077
17DAP/reference1.03450.814
27DAP/reference0.797440.038
39DAP/reference0.912710.163
41DAP/reference0.957110.512
42DAP/reference0.908940.287
43DAP/reference0.853430.11
47DAP/reference0.985590.593
52DAP/reference0.809620.134
57DAP/reference0.815970.036

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.060710.966
26DAP/20DAP0.938451
34DAP/26DAP1.096041
51DAP/34DAP1.078720.613
52DAP/51DAP1.036720.821
53DAP/52DAP1.020260.961
55DAP/53DAP1.0090.951
57DAP/55DAP1.153180.584
62DAP/57DAP1.103970.678
68DAP/62DAP0.954850.747
68DAP/14DAP0.986581

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.785730.155

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.032350.058
Mature Green Tomato/Ripe Tomato0.741880.107
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.10534
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.081321
1-1-2/M821.17442
12-2/M821.247281
12-4/M820.91090.619
1-3/M820.96577
2-1-1/M82N/AN/A
2-1/M821.22027
2-6/M820.9491
3-2/M820.798151
4-1-1/M820.587271
4-1/M820.98046
4-3-2/M820.663670.698
4-3/M820.6266
5-3/M821.340531
6-2/M820.865710.497
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.00649
9-3-2/M820.745090.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.9161
IL2-6/WTpooled1.129980.584
IL7-5/WTpooled1.252491
IL7-3/WTpooled0.936350.294
IL12-4/WTpooled0.800220.581
IL1-4/WTpooled0.952620.834
WT/WTpooled0.930251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.902740.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.062830.846
DC3000/delta hrp 6h1.274841
DC3000/delta hrp 12h1.173261
DC3000/delta hrp 24h1.028990.71

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.76345
DC3000 delta B/DC3000 delta AB0.969520.674

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.733841
Exp 36h1.031171
Exp 60h0.604940.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.027361
Var 0h0.931570.933
Var 12h I row2-row11.02260.379
Var 12h NI row2-row10.947540.82
Var 36h I row2-row11.084661
Var 36h NI row2-row10.862040.584
Var 60h I row2-row11.034681
Var 60h NI row2-row11.14810.904
Time course 0hI-0hNI0.990581
Time course 12hI-12hNI0.963270.568
Time course 36hI-36hNI0.873180.045
Time course 60hI-60hNI0.706370.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.447990.326
transgenic ySAMdc/azygous control (breaker)1.024221
transgenic ySAMdc/azygous control (red)1.139620.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.047260.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.010631
Manapal/WT (break)1.088390.381
Manapal/WT (red)0.905370.181