Expression of 1-1-5.3.6.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.75684 | 0.153 |
27DAP/17DAP | 1.05631 | 1 |
39DAP/27DAP | 0.88486 | 0.573 |
41DAP/39DAP | 1.61432 | 0.376 |
42DAP/41DAP | 1.09105 | 1 |
43DAP/42DAP | 0.80103 | 0.554 |
47DAP/43DAP | 0.90666 | 0.667 |
52DAP/47DAP | 2.14827 | 0.188 |
57DAP/52DAP | 0.7361 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11475 | 0.197 |
17DAP/reference | 0.97295 | 0.63 |
27DAP/reference | 0.97002 | 0.552 |
39DAP/reference | 0.96658 | 0.6 |
41DAP/reference | 1.08337 | 0.032 |
42DAP/reference | 1.08035 | 0.012 |
43DAP/reference | 1.06588 | 0.163 |
47DAP/reference | 1.01777 | 1 |
52DAP/reference | 0.97604 | 0.449 |
57DAP/reference | 1.0336 | 0.582 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83346 | 0.238 |
27DAP/17DAP | 0.989 | 0.919 |
39DAP/27DAP | 1.05154 | 0.758 |
41DAP/39DAP | 1.0805 | 0.914 |
42DAP/41DAP | 0.96277 | 0.712 |
43DAP/42DAP | 1.02227 | 1 |
47DAP/43DAP | 1.08268 | 0.848 |
52DAP/47DAP | 0.98827 | 0.925 |
57DAP/52DAP | 0.92537 | 0.511 |
57DAP/7DAP | 1.0327 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85437 | 0.104 |
17DAP/reference | 0.85864 | 0.025 |
27DAP/reference | 0.83504 | 0.01 |
39DAP/reference | 0.83755 | 0.011 |
41DAP/reference | 0.86164 | 0.036 |
42DAP/reference | 0.84693 | 0.05 |
43DAP/reference | 0.77524 | 0.029 |
47DAP/reference | 0.88606 | 0.101 |
52DAP/reference | 0.85571 | 0.012 |
57DAP/reference | 0.8089 | 0.019 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11558 | 0.203 |
17DAP/reference | 1.12093 | 0.117 |
27DAP/reference | 1.08271 | 0.902 |
39DAP/reference | 1.02824 | 0.824 |
41DAP/reference | 1.00807 | 1 |
42DAP/reference | 1.03396 | 0.843 |
43DAP/reference | 1.37726 | 0.063 |
47DAP/reference | 0.98987 | 0.543 |
52DAP/reference | 1.10822 | 0.069 |
57DAP/reference | 1.33564 | 0.023 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88564 | 0.077 |
17DAP/reference | 1.0345 | 0.814 |
27DAP/reference | 0.79744 | 0.038 |
39DAP/reference | 0.91271 | 0.163 |
41DAP/reference | 0.95711 | 0.512 |
42DAP/reference | 0.90894 | 0.287 |
43DAP/reference | 0.85343 | 0.11 |
47DAP/reference | 0.98559 | 0.593 |
52DAP/reference | 0.80962 | 0.134 |
57DAP/reference | 0.81597 | 0.036 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06071 | 0.966 |
26DAP/20DAP | 0.93845 | 1 |
34DAP/26DAP | 1.09604 | 1 |
51DAP/34DAP | 1.07872 | 0.613 |
52DAP/51DAP | 1.03672 | 0.821 |
53DAP/52DAP | 1.02026 | 0.961 |
55DAP/53DAP | 1.009 | 0.951 |
57DAP/55DAP | 1.15318 | 0.584 |
62DAP/57DAP | 1.10397 | 0.678 |
68DAP/62DAP | 0.95485 | 0.747 |
68DAP/14DAP | 0.98658 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.78573 | 0.155 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.03235 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.74188 | 0.107 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.10534 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08132 | 1 |
1-1-2/M82 | 1.17442 | |
12-2/M82 | 1.24728 | 1 |
12-4/M82 | 0.9109 | 0.619 |
1-3/M82 | 0.96577 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 1.22027 | |
2-6/M82 | 0.949 | 1 |
3-2/M82 | 0.79815 | 1 |
4-1-1/M82 | 0.58727 | 1 |
4-1/M82 | 0.98046 | |
4-3-2/M82 | 0.66367 | 0.698 |
4-3/M82 | 0.6266 | |
5-3/M82 | 1.34053 | 1 |
6-2/M82 | 0.86571 | 0.497 |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.00649 | |
9-3-2/M82 | 0.74509 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9161 | |
IL2-6/WTpooled | 1.12998 | 0.584 |
IL7-5/WTpooled | 1.25249 | 1 |
IL7-3/WTpooled | 0.93635 | 0.294 |
IL12-4/WTpooled | 0.80022 | 0.581 |
IL1-4/WTpooled | 0.95262 | 0.834 |
WT/WTpooled | 0.93025 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90274 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06283 | 0.846 |
DC3000/delta hrp 6h | 1.27484 | 1 |
DC3000/delta hrp 12h | 1.17326 | 1 |
DC3000/delta hrp 24h | 1.02899 | 0.71 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.76345 | |
DC3000 delta B/DC3000 delta AB | 0.96952 | 0.674 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.73384 | 1 |
Exp 36h | 1.03117 | 1 |
Exp 60h | 0.60494 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02736 | 1 |
Var 0h | 0.93157 | 0.933 |
Var 12h I row2-row1 | 1.0226 | 0.379 |
Var 12h NI row2-row1 | 0.94754 | 0.82 |
Var 36h I row2-row1 | 1.08466 | 1 |
Var 36h NI row2-row1 | 0.86204 | 0.584 |
Var 60h I row2-row1 | 1.03468 | 1 |
Var 60h NI row2-row1 | 1.1481 | 0.904 |
Time course 0hI-0hNI | 0.99058 | 1 |
Time course 12hI-12hNI | 0.96327 | 0.568 |
Time course 36hI-36hNI | 0.87318 | 0.045 |
Time course 60hI-60hNI | 0.70637 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.44799 | 0.326 |
transgenic ySAMdc/azygous control (breaker) | 1.02422 | 1 |
transgenic ySAMdc/azygous control (red) | 1.13962 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04726 | 0.083 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.01063 | 1 |
Manapal/WT (break) | 1.08839 | 0.381 |
Manapal/WT (red) | 0.90537 | 0.181 |
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