Expression of 1-1-5.3.7.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.040040.838
27DAP/17DAP1.050280.889
39DAP/27DAP0.961790.67
41DAP/39DAP0.943120.766
42DAP/41DAP1.00381
43DAP/42DAP1.008851
47DAP/43DAP1.013230.979
52DAP/47DAP0.931620.786
57DAP/52DAP0.986590.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.973050.489
17DAP/reference1.031630.161
27DAP/reference0.993940.779
39DAP/reference1.004220.871
41DAP/reference1.069590.145
42DAP/reference0.987950.305
43DAP/reference1.063680.34
47DAP/reference1.07140.243
52DAP/reference0.945020.319
57DAP/reference0.97880.553

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.055570.29
27DAP/17DAP0.941120.782
39DAP/27DAP1.035650.663
41DAP/39DAP1.002281
42DAP/41DAP1.014040.991
43DAP/42DAP1.099540.015
47DAP/43DAP1.100670.699
52DAP/47DAP0.958020.898
57DAP/52DAP0.984320.726
57DAP/7DAP0.975591

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01378
17DAP/reference1.075220.477
27DAP/reference1.076890.371
39DAP/reference1.034650.486
41DAP/reference1.068440.141
42DAP/reference1.09824
43DAP/reference1.045050.457
47DAP/reference1.050420.561
52DAP/reference1.037220.121
57DAP/reference1.069820.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.983550.736
17DAP/reference0.971910.317
27DAP/reference0.974310.423
39DAP/reference0.930710.129
41DAP/reference0.942610.242
42DAP/reference0.884060.01
43DAP/reference0.94590.314
47DAP/reference0.97710.338
52DAP/reference0.959260.171
57DAP/reference0.96750.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92610.024
17DAP/reference0.91940.105
27DAP/reference1.007620.967
39DAP/reference1.016020.836
41DAP/reference0.954390.019
42DAP/reference0.991270.671
43DAP/reference0.956790.305
47DAP/reference1.151480.029
52DAP/reference1.10020.363
57DAP/reference1.103870.245

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.052520.966
26DAP/20DAP0.957261
34DAP/26DAP1.02171
51DAP/34DAP1.03970.719
52DAP/51DAP0.981031
53DAP/52DAP0.889180.194
55DAP/53DAP0.84658
57DAP/55DAP0.975250.872
62DAP/57DAP1.042880.833
68DAP/62DAP0.875150.406
68DAP/14DAP1.306780.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.931030.155

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.479660.087
Mature Green Tomato/Ripe Tomato1.061090.948
Immature Eggplant/Mature Eggplant0.550010.066
Ripe Pepper/Ripe Tomato0.951441
Mature Eggplant/Ripe Tomato1.189971

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.009351
1-1-2/M820.93571
12-2/M820.941610.955
12-4/M820.963470.358
1-3/M820.925510.378
2-1-1/M820.882060.465
2-1/M82N/AN/A
2-6/M820.936351
3-2/M820.978551
4-1-1/M820.947361
4-1/M821.155651
4-3-2/M821.08222
4-3/M820.924041
5-3/M821.077920.572
6-2/M821.007381
6-3/M821.03501
7-1/M82N/AN/A
7-2/M820.85926
9-3-2/M820.859670.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.125740.493
IL2-6/WTpooled0.771420.383
IL7-5/WTpooled0.968711
IL7-3/WTpooled1.166690.362
IL12-4/WTpooled0.955331
IL1-4/WTpooled0.99531
WT/WTpooled0.939011

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.161090.167

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.987881
DC3000/delta hrp 6h1.028411
DC3000/delta hrp 12h1.034041
DC3000/delta hrp 24h0.983660.966

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.030890.655

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.172181
Exp 36h1.181131
Exp 60h1.318530.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004641
Var 0h0.466150.457
Var 12h I row2-row11.125350.196
Var 12h NI row2-row11.031081
Var 36h I row2-row10.931060.805
Var 36h NI row2-row10.899890.478
Var 60h I row2-row10.979040.952
Var 60h NI row2-row11.086770.904
Time course 0hI-0hNI1.018371
Time course 12hI-12hNI1.048480.633
Time course 36hI-36hNI1.112240.07
Time course 60hI-60hNI1.423670.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.050150.372
transgenic ySAMdc/azygous control (breaker)0.90230.251
transgenic ySAMdc/azygous control (red)1.160680.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.068510.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.622850.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.417410.087
Manapal/WT (break)0.999281
Manapal/WT (red)1.396410.413