Expression of 1-1-5.3.7.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04004 | 0.838 |
27DAP/17DAP | 1.05028 | 0.889 |
39DAP/27DAP | 0.96179 | 0.67 |
41DAP/39DAP | 0.94312 | 0.766 |
42DAP/41DAP | 1.0038 | 1 |
43DAP/42DAP | 1.00885 | 1 |
47DAP/43DAP | 1.01323 | 0.979 |
52DAP/47DAP | 0.93162 | 0.786 |
57DAP/52DAP | 0.98659 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97305 | 0.489 |
17DAP/reference | 1.03163 | 0.161 |
27DAP/reference | 0.99394 | 0.779 |
39DAP/reference | 1.00422 | 0.871 |
41DAP/reference | 1.06959 | 0.145 |
42DAP/reference | 0.98795 | 0.305 |
43DAP/reference | 1.06368 | 0.34 |
47DAP/reference | 1.0714 | 0.243 |
52DAP/reference | 0.94502 | 0.319 |
57DAP/reference | 0.9788 | 0.553 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05557 | 0.29 |
27DAP/17DAP | 0.94112 | 0.782 |
39DAP/27DAP | 1.03565 | 0.663 |
41DAP/39DAP | 1.00228 | 1 |
42DAP/41DAP | 1.01404 | 0.991 |
43DAP/42DAP | 1.09954 | 0.015 |
47DAP/43DAP | 1.10067 | 0.699 |
52DAP/47DAP | 0.95802 | 0.898 |
57DAP/52DAP | 0.98432 | 0.726 |
57DAP/7DAP | 0.97559 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01378 | |
17DAP/reference | 1.07522 | 0.477 |
27DAP/reference | 1.07689 | 0.371 |
39DAP/reference | 1.03465 | 0.486 |
41DAP/reference | 1.06844 | 0.141 |
42DAP/reference | 1.09824 | |
43DAP/reference | 1.04505 | 0.457 |
47DAP/reference | 1.05042 | 0.561 |
52DAP/reference | 1.03722 | 0.121 |
57DAP/reference | 1.06982 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98355 | 0.736 |
17DAP/reference | 0.97191 | 0.317 |
27DAP/reference | 0.97431 | 0.423 |
39DAP/reference | 0.93071 | 0.129 |
41DAP/reference | 0.94261 | 0.242 |
42DAP/reference | 0.88406 | 0.01 |
43DAP/reference | 0.9459 | 0.314 |
47DAP/reference | 0.9771 | 0.338 |
52DAP/reference | 0.95926 | 0.171 |
57DAP/reference | 0.9675 | 0.259 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9261 | 0.024 |
17DAP/reference | 0.9194 | 0.105 |
27DAP/reference | 1.00762 | 0.967 |
39DAP/reference | 1.01602 | 0.836 |
41DAP/reference | 0.95439 | 0.019 |
42DAP/reference | 0.99127 | 0.671 |
43DAP/reference | 0.95679 | 0.305 |
47DAP/reference | 1.15148 | 0.029 |
52DAP/reference | 1.1002 | 0.363 |
57DAP/reference | 1.10387 | 0.245 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05252 | 0.966 |
26DAP/20DAP | 0.95726 | 1 |
34DAP/26DAP | 1.0217 | 1 |
51DAP/34DAP | 1.0397 | 0.719 |
52DAP/51DAP | 0.98103 | 1 |
53DAP/52DAP | 0.88918 | 0.194 |
55DAP/53DAP | 0.84658 | |
57DAP/55DAP | 0.97525 | 0.872 |
62DAP/57DAP | 1.04288 | 0.833 |
68DAP/62DAP | 0.87515 | 0.406 |
68DAP/14DAP | 1.30678 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93103 | 0.155 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.47966 | 0.087 |
Mature Green Tomato/Ripe Tomato | 1.06109 | 0.948 |
Immature Eggplant/Mature Eggplant | 0.55001 | 0.066 |
Ripe Pepper/Ripe Tomato | 0.95144 | 1 |
Mature Eggplant/Ripe Tomato | 1.18997 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00935 | 1 |
1-1-2/M82 | 0.93571 | |
12-2/M82 | 0.94161 | 0.955 |
12-4/M82 | 0.96347 | 0.358 |
1-3/M82 | 0.92551 | 0.378 |
2-1-1/M82 | 0.88206 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.93635 | 1 |
3-2/M82 | 0.97855 | 1 |
4-1-1/M82 | 0.94736 | 1 |
4-1/M82 | 1.15565 | 1 |
4-3-2/M82 | 1.08222 | |
4-3/M82 | 0.92404 | 1 |
5-3/M82 | 1.07792 | 0.572 |
6-2/M82 | 1.00738 | 1 |
6-3/M82 | 1.03501 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.85926 | |
9-3-2/M82 | 0.85967 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12574 | 0.493 |
IL2-6/WTpooled | 0.77142 | 0.383 |
IL7-5/WTpooled | 0.96871 | 1 |
IL7-3/WTpooled | 1.16669 | 0.362 |
IL12-4/WTpooled | 0.95533 | 1 |
IL1-4/WTpooled | 0.9953 | 1 |
WT/WTpooled | 0.93901 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16109 | 0.167 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98788 | 1 |
DC3000/delta hrp 6h | 1.02841 | 1 |
DC3000/delta hrp 12h | 1.03404 | 1 |
DC3000/delta hrp 24h | 0.98366 | 0.966 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.03089 | 0.655 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17218 | 1 |
Exp 36h | 1.18113 | 1 |
Exp 60h | 1.31853 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00464 | 1 |
Var 0h | 0.46615 | 0.457 |
Var 12h I row2-row1 | 1.12535 | 0.196 |
Var 12h NI row2-row1 | 1.03108 | 1 |
Var 36h I row2-row1 | 0.93106 | 0.805 |
Var 36h NI row2-row1 | 0.89989 | 0.478 |
Var 60h I row2-row1 | 0.97904 | 0.952 |
Var 60h NI row2-row1 | 1.08677 | 0.904 |
Time course 0hI-0hNI | 1.01837 | 1 |
Time course 12hI-12hNI | 1.04848 | 0.633 |
Time course 36hI-36hNI | 1.11224 | 0.07 |
Time course 60hI-60hNI | 1.42367 | 0.012 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05015 | 0.372 |
transgenic ySAMdc/azygous control (breaker) | 0.9023 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.16068 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06851 | 0.234 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.62285 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.41741 | 0.087 |
Manapal/WT (break) | 0.99928 | 1 |
Manapal/WT (red) | 1.39641 | 0.413 |
|
|