Expression of 1-1-5.3.7.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.365410.198
27DAP/17DAP0.952670.918
39DAP/27DAP1.039770.876
41DAP/39DAP1.187640.575
42DAP/41DAP1.079710.926
43DAP/42DAP1.010610.937
47DAP/43DAP1.237340.618
52DAP/47DAP0.868910.637
57DAP/52DAP1.08640.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.820310.128
17DAP/reference0.58240.007
27DAP/reference0.681050.047
39DAP/reference0.616350.013
41DAP/reference0.537770.009
42DAP/reference0.734590.006
43DAP/reference0.694720.051
47DAP/reference0.707950.014
52DAP/reference0.714190.118
57DAP/reference0.942550.395

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.514510.218
27DAP/17DAP1.081490.957
39DAP/27DAP1.256370.158
41DAP/39DAP1.415190.774
42DAP/41DAP1.308560.81
43DAP/42DAP0.876740.482
47DAP/43DAP0.987410.855
52DAP/47DAP1.271070.524
57DAP/52DAP1.056340.925
57DAP/7DAP0.850781

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.253990.257
17DAP/reference1.023011
27DAP/reference1.063611
39DAP/reference0.940060.264
41DAP/reference1.012920.778
42DAP/reference0.93040.415
43DAP/reference0.83950.166
47DAP/reference0.675630.079
52DAP/reference0.874010.033
57DAP/reference0.907480.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.698260.051
17DAP/reference0.776970.109
27DAP/reference0.990120.576
39DAP/reference0.769450.102
41DAP/reference0.953170.393
42DAP/reference0.900440.189
43DAP/reference0.533080.013
47DAP/reference0.602090.013
52DAP/reference0.620940.005
57DAP/reference0.456560.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.764440.017
17DAP/reference1.701430.105
27DAP/reference0.981270.594
39DAP/reference1.020941
41DAP/reference1.031751
42DAP/reference1.028441
43DAP/reference0.987340.614
47DAP/reference0.554780.016
52DAP/reference0.764330.2
57DAP/reference1.335990.138

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.95199
26DAP/20DAP1.712061
34DAP/26DAP4.400541
51DAP/34DAP2.016580.978
52DAP/51DAP6.21330.035
53DAP/52DAP0.6750.049
55DAP/53DAP1.279050.645
57DAP/55DAP0.434790.03
62DAP/57DAP1.465090.115
68DAP/62DAP1.052750.939
68DAP/14DAP0.780910.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.478020.7

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.52120.058
Mature Green Tomato/Ripe Tomato0.86786
Immature Eggplant/Mature Eggplant0.47160.086
Ripe Pepper/Ripe Tomato1.34275
Mature Eggplant/Ripe Tomato739.3821

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.95311
12-2/M82N/AN/A
12-4/M821.08335
1-3/M82N/AN/A
2-1-1/M821.11802
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.00602
4-1-1/M820.88764
4-1/M821.091010.512
4-3-2/M820.948041
4-3/M82N/AN/A
5-3/M821.387160.496
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.06887
9-3-2/M820.917991

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.086030.365
IL2-6/WTpooled1.005071
IL7-5/WTpooled1.170980.722
IL7-3/WTpooled1.033291
IL12-4/WTpooled1.040351
IL1-4/WTpooled0.988571
WT/WTpooled0.978351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.082561

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.99781
DC3000/delta hrp 6h1.00570.95
DC3000/delta hrp 12h1.665021
DC3000/delta hrp 24h0.899450.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.658250.059
DC3000 delta B/DC3000 delta AB0.540480.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.996781
Exp 36h0.85440.589
Exp 60h0.734980.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964231
Var 0h1.097050.782
Var 12h I row2-row10.904130.338
Var 12h NI row2-row11.08280.649
Var 36h I row2-row10.961351
Var 36h NI row2-row10.977860.791
Var 60h I row2-row11.302560.562
Var 60h NI row2-row11.055080.904
Time course 0hI-0hNI0.937490.433
Time course 12hI-12hNI1.056640.615
Time course 36hI-36hNI1.012241
Time course 60hI-60hNI0.226540.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.124780.748
transgenic ySAMdc/azygous control (breaker)2.467390.165
transgenic ySAMdc/azygous control (red)0.997151

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.778250.16

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.254430.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)15.70740.084
Manapal/WT (break)6.869380.123
Manapal/WT (red)0.937540.503