Expression of 1-1-5.3.7.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.36541 | 0.198 |
27DAP/17DAP | 0.95267 | 0.918 |
39DAP/27DAP | 1.03977 | 0.876 |
41DAP/39DAP | 1.18764 | 0.575 |
42DAP/41DAP | 1.07971 | 0.926 |
43DAP/42DAP | 1.01061 | 0.937 |
47DAP/43DAP | 1.23734 | 0.618 |
52DAP/47DAP | 0.86891 | 0.637 |
57DAP/52DAP | 1.0864 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82031 | 0.128 |
17DAP/reference | 0.5824 | 0.007 |
27DAP/reference | 0.68105 | 0.047 |
39DAP/reference | 0.61635 | 0.013 |
41DAP/reference | 0.53777 | 0.009 |
42DAP/reference | 0.73459 | 0.006 |
43DAP/reference | 0.69472 | 0.051 |
47DAP/reference | 0.70795 | 0.014 |
52DAP/reference | 0.71419 | 0.118 |
57DAP/reference | 0.94255 | 0.395 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.51451 | 0.218 |
27DAP/17DAP | 1.08149 | 0.957 |
39DAP/27DAP | 1.25637 | 0.158 |
41DAP/39DAP | 1.41519 | 0.774 |
42DAP/41DAP | 1.30856 | 0.81 |
43DAP/42DAP | 0.87674 | 0.482 |
47DAP/43DAP | 0.98741 | 0.855 |
52DAP/47DAP | 1.27107 | 0.524 |
57DAP/52DAP | 1.05634 | 0.925 |
57DAP/7DAP | 0.85078 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25399 | 0.257 |
17DAP/reference | 1.02301 | 1 |
27DAP/reference | 1.06361 | 1 |
39DAP/reference | 0.94006 | 0.264 |
41DAP/reference | 1.01292 | 0.778 |
42DAP/reference | 0.9304 | 0.415 |
43DAP/reference | 0.8395 | 0.166 |
47DAP/reference | 0.67563 | 0.079 |
52DAP/reference | 0.87401 | 0.033 |
57DAP/reference | 0.90748 | 0.183 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.69826 | 0.051 |
17DAP/reference | 0.77697 | 0.109 |
27DAP/reference | 0.99012 | 0.576 |
39DAP/reference | 0.76945 | 0.102 |
41DAP/reference | 0.95317 | 0.393 |
42DAP/reference | 0.90044 | 0.189 |
43DAP/reference | 0.53308 | 0.013 |
47DAP/reference | 0.60209 | 0.013 |
52DAP/reference | 0.62094 | 0.005 |
57DAP/reference | 0.45656 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.76444 | 0.017 |
17DAP/reference | 1.70143 | 0.105 |
27DAP/reference | 0.98127 | 0.594 |
39DAP/reference | 1.02094 | 1 |
41DAP/reference | 1.03175 | 1 |
42DAP/reference | 1.02844 | 1 |
43DAP/reference | 0.98734 | 0.614 |
47DAP/reference | 0.55478 | 0.016 |
52DAP/reference | 0.76433 | 0.2 |
57DAP/reference | 1.33599 | 0.138 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95199 | |
26DAP/20DAP | 1.71206 | 1 |
34DAP/26DAP | 4.40054 | 1 |
51DAP/34DAP | 2.01658 | 0.978 |
52DAP/51DAP | 6.2133 | 0.035 |
53DAP/52DAP | 0.675 | 0.049 |
55DAP/53DAP | 1.27905 | 0.645 |
57DAP/55DAP | 0.43479 | 0.03 |
62DAP/57DAP | 1.46509 | 0.115 |
68DAP/62DAP | 1.05275 | 0.939 |
68DAP/14DAP | 0.78091 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.47802 | 0.7 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.5212 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.86786 | |
Immature Eggplant/Mature Eggplant | 0.4716 | 0.086 |
Ripe Pepper/Ripe Tomato | 1.34275 | |
Mature Eggplant/Ripe Tomato | 739.382 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.95311 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.08335 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.11802 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.00602 | |
4-1-1/M82 | 0.88764 | |
4-1/M82 | 1.09101 | 0.512 |
4-3-2/M82 | 0.94804 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.38716 | 0.496 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.06887 | |
9-3-2/M82 | 0.91799 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.08603 | 0.365 |
IL2-6/WTpooled | 1.00507 | 1 |
IL7-5/WTpooled | 1.17098 | 0.722 |
IL7-3/WTpooled | 1.03329 | 1 |
IL12-4/WTpooled | 1.04035 | 1 |
IL1-4/WTpooled | 0.98857 | 1 |
WT/WTpooled | 0.97835 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08256 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9978 | 1 |
DC3000/delta hrp 6h | 1.0057 | 0.95 |
DC3000/delta hrp 12h | 1.66502 | 1 |
DC3000/delta hrp 24h | 0.89945 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.65825 | 0.059 |
DC3000 delta B/DC3000 delta AB | 0.54048 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99678 | 1 |
Exp 36h | 0.8544 | 0.589 |
Exp 60h | 0.73498 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96423 | 1 |
Var 0h | 1.09705 | 0.782 |
Var 12h I row2-row1 | 0.90413 | 0.338 |
Var 12h NI row2-row1 | 1.0828 | 0.649 |
Var 36h I row2-row1 | 0.96135 | 1 |
Var 36h NI row2-row1 | 0.97786 | 0.791 |
Var 60h I row2-row1 | 1.30256 | 0.562 |
Var 60h NI row2-row1 | 1.05508 | 0.904 |
Time course 0hI-0hNI | 0.93749 | 0.433 |
Time course 12hI-12hNI | 1.05664 | 0.615 |
Time course 36hI-36hNI | 1.01224 | 1 |
Time course 60hI-60hNI | 0.22654 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.12478 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 2.46739 | 0.165 |
transgenic ySAMdc/azygous control (red) | 0.99715 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.77825 | 0.16 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.25443 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 15.7074 | 0.084 |
Manapal/WT (break) | 6.86938 | 0.123 |
Manapal/WT (red) | 0.93754 | 0.503 |
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