Expression of 1-1-5.3.8.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.083430.891
27DAP/17DAP1.134850.849
39DAP/27DAP1.426920.527
41DAP/39DAP1.059210.949
42DAP/41DAP1.338630.552
43DAP/42DAP1.125060.976
47DAP/43DAP1.641630.273
52DAP/47DAP0.717540.247
57DAP/52DAP1.387960.839

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.850310.049
17DAP/reference1.015871
27DAP/reference1.062730.446
39DAP/reference1.085060.593
41DAP/reference0.883460.039
42DAP/reference1.177960.174
43DAP/reference1.265340.008
47DAP/reference1.331020.002
52DAP/reference1.406730.017
57DAP/reference1.373510.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.517990.036
27DAP/17DAP1.051110.836
39DAP/27DAP0.907170.382
41DAP/39DAP1.089290.817
42DAP/41DAP1.064910.8
43DAP/42DAP0.932780.172
47DAP/43DAP1.012371
52DAP/47DAP1.11520.669
57DAP/52DAP1.072220.606
57DAP/7DAP1.32150.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.511920.054
17DAP/reference1.942810.007
27DAP/reference2.097810.006
39DAP/reference2.107280.006
41DAP/reference2.185420.01
42DAP/reference1.882130.008
43DAP/reference1.715060.008
47DAP/reference1.515650.079
52DAP/reference1.900260.113
57DAP/reference1.743490.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934450.329
17DAP/reference1.003751
27DAP/reference1.031531
39DAP/reference1.195140.164
41DAP/reference1.102110.893
42DAP/reference1.381140.044
43DAP/reference1.01590.863
47DAP/reference1.168680.124
52DAP/reference1.042991
57DAP/reference0.792110.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.329820.063
17DAP/reference1.023161
27DAP/reference1.435740.025
39DAP/reference1.518150.062
41DAP/reference1.381640.205
42DAP/reference1.863660.199
43DAP/reference1.074620.827
47DAP/reference1.125470.405
52DAP/reference1.987750.081
57DAP/reference1.942540.029

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.907550.915
26DAP/20DAP1.095951
34DAP/26DAP0.876070.816
51DAP/34DAP1.484520.033
52DAP/51DAP0.960171
53DAP/52DAP1.277010.171
55DAP/53DAP0.779370.088
57DAP/55DAP1.084950.997
62DAP/57DAP0.774770.088
68DAP/62DAP1.177650.481
68DAP/14DAP0.91941

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.577240.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.720480.196
Mature Green Tomato/Ripe Tomato0.81610.132
Immature Eggplant/Mature Eggplant1.005141
Ripe Pepper/Ripe Tomato1.328171
Mature Eggplant/Ripe Tomato0.789891

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.980150.841
1-1-2/M821.329141
12-2/M820.788530.862
12-4/M821.29231
1-3/M822.09034
2-1-1/M820.91662
2-1/M820.874741
2-6/M821.016930.695
3-2/M821.45465
4-1-1/M821.172610.966
4-1/M821.96851
4-3-2/M821.371020.508
4-3/M821.307381
5-3/M820.988241
6-2/M821.244471
6-3/M820.78852
7-1/M820.76614
7-2/M820.96513
9-3-2/M821.494781

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.99138
WT/WTpooled1.6031

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.042120.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.037950.921
DC3000/delta hrp 6h0.89670.95
DC3000/delta hrp 12h0.908251
DC3000/delta hrp 24h1.170020.174

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.241740.068
DC3000 delta B/DC3000 delta AB1.142280.256

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.086541
Exp 36h1.14221
Exp 60h1.138290.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.019561
Var 0h1.239870.311
Var 12h I row2-row10.981340.948
Var 12h NI row2-row11.093090.649
Var 36h I row2-row11.184220.601
Var 36h NI row2-row11.021781
Var 60h I row2-row10.789760.293
Var 60h NI row2-row10.934190.932
Time course 0hI-0hNI1.07760.662
Time course 12hI-12hNI1.049050.743
Time course 36hI-36hNI1.192140.128
Time course 60hI-60hNI1.988250.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.943010.377
transgenic ySAMdc/azygous control (breaker)0.895820.15
transgenic ySAMdc/azygous control (red)0.999771

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.913680.104

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.981030.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.835820.172
Manapal/WT (break)0.789821
Manapal/WT (red)0.913140.728