Expression of 1-1-5.3.8.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08343 | 0.891 |
27DAP/17DAP | 1.13485 | 0.849 |
39DAP/27DAP | 1.42692 | 0.527 |
41DAP/39DAP | 1.05921 | 0.949 |
42DAP/41DAP | 1.33863 | 0.552 |
43DAP/42DAP | 1.12506 | 0.976 |
47DAP/43DAP | 1.64163 | 0.273 |
52DAP/47DAP | 0.71754 | 0.247 |
57DAP/52DAP | 1.38796 | 0.839 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85031 | 0.049 |
17DAP/reference | 1.01587 | 1 |
27DAP/reference | 1.06273 | 0.446 |
39DAP/reference | 1.08506 | 0.593 |
41DAP/reference | 0.88346 | 0.039 |
42DAP/reference | 1.17796 | 0.174 |
43DAP/reference | 1.26534 | 0.008 |
47DAP/reference | 1.33102 | 0.002 |
52DAP/reference | 1.40673 | 0.017 |
57DAP/reference | 1.37351 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.51799 | 0.036 |
27DAP/17DAP | 1.05111 | 0.836 |
39DAP/27DAP | 0.90717 | 0.382 |
41DAP/39DAP | 1.08929 | 0.817 |
42DAP/41DAP | 1.06491 | 0.8 |
43DAP/42DAP | 0.93278 | 0.172 |
47DAP/43DAP | 1.01237 | 1 |
52DAP/47DAP | 1.1152 | 0.669 |
57DAP/52DAP | 1.07222 | 0.606 |
57DAP/7DAP | 1.3215 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.51192 | 0.054 |
17DAP/reference | 1.94281 | 0.007 |
27DAP/reference | 2.09781 | 0.006 |
39DAP/reference | 2.10728 | 0.006 |
41DAP/reference | 2.18542 | 0.01 |
42DAP/reference | 1.88213 | 0.008 |
43DAP/reference | 1.71506 | 0.008 |
47DAP/reference | 1.51565 | 0.079 |
52DAP/reference | 1.90026 | 0.113 |
57DAP/reference | 1.74349 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93445 | 0.329 |
17DAP/reference | 1.00375 | 1 |
27DAP/reference | 1.03153 | 1 |
39DAP/reference | 1.19514 | 0.164 |
41DAP/reference | 1.10211 | 0.893 |
42DAP/reference | 1.38114 | 0.044 |
43DAP/reference | 1.0159 | 0.863 |
47DAP/reference | 1.16868 | 0.124 |
52DAP/reference | 1.04299 | 1 |
57DAP/reference | 0.79211 | 0.005 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32982 | 0.063 |
17DAP/reference | 1.02316 | 1 |
27DAP/reference | 1.43574 | 0.025 |
39DAP/reference | 1.51815 | 0.062 |
41DAP/reference | 1.38164 | 0.205 |
42DAP/reference | 1.86366 | 0.199 |
43DAP/reference | 1.07462 | 0.827 |
47DAP/reference | 1.12547 | 0.405 |
52DAP/reference | 1.98775 | 0.081 |
57DAP/reference | 1.94254 | 0.029 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90755 | 0.915 |
26DAP/20DAP | 1.09595 | 1 |
34DAP/26DAP | 0.87607 | 0.816 |
51DAP/34DAP | 1.48452 | 0.033 |
52DAP/51DAP | 0.96017 | 1 |
53DAP/52DAP | 1.27701 | 0.171 |
55DAP/53DAP | 0.77937 | 0.088 |
57DAP/55DAP | 1.08495 | 0.997 |
62DAP/57DAP | 0.77477 | 0.088 |
68DAP/62DAP | 1.17765 | 0.481 |
68DAP/14DAP | 0.9194 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.57724 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72048 | 0.196 |
Mature Green Tomato/Ripe Tomato | 0.8161 | 0.132 |
Immature Eggplant/Mature Eggplant | 1.00514 | 1 |
Ripe Pepper/Ripe Tomato | 1.32817 | 1 |
Mature Eggplant/Ripe Tomato | 0.78989 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98015 | 0.841 |
1-1-2/M82 | 1.32914 | 1 |
12-2/M82 | 0.78853 | 0.862 |
12-4/M82 | 1.2923 | 1 |
1-3/M82 | 2.09034 | |
2-1-1/M82 | 0.91662 | |
2-1/M82 | 0.87474 | 1 |
2-6/M82 | 1.01693 | 0.695 |
3-2/M82 | 1.45465 | |
4-1-1/M82 | 1.17261 | 0.966 |
4-1/M82 | 1.9685 | 1 |
4-3-2/M82 | 1.37102 | 0.508 |
4-3/M82 | 1.30738 | 1 |
5-3/M82 | 0.98824 | 1 |
6-2/M82 | 1.24447 | 1 |
6-3/M82 | 0.78852 | |
7-1/M82 | 0.76614 | |
7-2/M82 | 0.96513 | |
9-3-2/M82 | 1.49478 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.99138 | |
WT/WTpooled | 1.603 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04212 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03795 | 0.921 |
DC3000/delta hrp 6h | 0.8967 | 0.95 |
DC3000/delta hrp 12h | 0.90825 | 1 |
DC3000/delta hrp 24h | 1.17002 | 0.174 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.24174 | 0.068 |
DC3000 delta B/DC3000 delta AB | 1.14228 | 0.256 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08654 | 1 |
Exp 36h | 1.1422 | 1 |
Exp 60h | 1.13829 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01956 | 1 |
Var 0h | 1.23987 | 0.311 |
Var 12h I row2-row1 | 0.98134 | 0.948 |
Var 12h NI row2-row1 | 1.09309 | 0.649 |
Var 36h I row2-row1 | 1.18422 | 0.601 |
Var 36h NI row2-row1 | 1.02178 | 1 |
Var 60h I row2-row1 | 0.78976 | 0.293 |
Var 60h NI row2-row1 | 0.93419 | 0.932 |
Time course 0hI-0hNI | 1.0776 | 0.662 |
Time course 12hI-12hNI | 1.04905 | 0.743 |
Time course 36hI-36hNI | 1.19214 | 0.128 |
Time course 60hI-60hNI | 1.98825 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94301 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 0.89582 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.99977 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91368 | 0.104 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98103 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83582 | 0.172 |
Manapal/WT (break) | 0.78982 | 1 |
Manapal/WT (red) | 0.91314 | 0.728 |
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