Expression of 1-1-5.3.8.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.87050.486
27DAP/17DAP1.250340.809
39DAP/27DAP0.868920.537
41DAP/39DAP1.130650.663
42DAP/41DAP1.023371
43DAP/42DAP1.068351
47DAP/43DAP0.984030.835
52DAP/47DAP0.840050.595
57DAP/52DAP1.05950.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.898130.057
17DAP/reference1.021090.787
27DAP/reference1.097670.291
39DAP/reference1.061740.453
41DAP/reference0.870560.114
42DAP/reference0.90880.024
43DAP/reference1.042860.866
47DAP/reference1.147980.096
52DAP/reference1.191680.114
57DAP/reference1.150560.05

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.932520.428
27DAP/17DAP1.082790.73
39DAP/27DAP1.063660.57
41DAP/39DAP1.044231
42DAP/41DAP1.027360.991
43DAP/42DAP1.054240.192
47DAP/43DAP0.969620.796
52DAP/47DAP0.996470.969
57DAP/52DAP1.001250.907
57DAP/7DAP1.055291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.075030.676
17DAP/reference0.93980.253
27DAP/reference1.030830.804
39DAP/reference1.188420.12
41DAP/reference1.025030.811
42DAP/reference1.231430.308
43DAP/reference1.204870.364
47DAP/reference0.984590.671
52DAP/reference1.126070.491
57DAP/reference0.991130.629

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.926080.386
17DAP/reference0.972410.523
27DAP/reference0.958410.467
39DAP/reference0.923180.257
41DAP/reference1.065170.96
42DAP/reference1.030560.843
43DAP/reference1.240530.247
47DAP/reference1.051580.513
52DAP/reference1.040290.498
57DAP/reference0.824120.107

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.040910.532
17DAP/reference1.077810.638
27DAP/reference1.706530.248
39DAP/reference1.00941
41DAP/reference0.940320.459
42DAP/reference0.962050.552
43DAP/reference0.76230.15
47DAP/reference1.050320.82
52DAP/reference0.993280.838
57DAP/reference0.983980.643

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.03450.966
26DAP/20DAP0.91830.512
34DAP/26DAP1.059610.304
51DAP/34DAP1.127370.597
52DAP/51DAP1.024560.792
53DAP/52DAP1.032940.797
55DAP/53DAP1.155910.584
57DAP/55DAP1.159720.779
62DAP/57DAP1.127560.833
68DAP/62DAP1.06450.956
68DAP/14DAP0.736090.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.765690.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.911880.058
Mature Green Tomato/Ripe Tomato1.017371
Immature Eggplant/Mature Eggplant0.975121
Ripe Pepper/Ripe Tomato1.013521
Mature Eggplant/Ripe Tomato1.328471

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.962210.944
1-1-2/M821.096231
12-2/M821.111741
12-4/M820.903010.619
1-3/M821.292190.479
2-1-1/M820.86139
2-1/M821.09289
2-6/M821.060870.695
3-2/M821.00143
4-1-1/M821.313580.938
4-1/M821.048781
4-3-2/M820.937021
4-3/M821.54261
5-3/M820.89111
6-2/M821.393781
6-3/M820.63620.982
7-1/M82N/AN/A
7-2/M821.166551
9-3-2/M820.91151

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.39029
IL2-6/WTpooled1.003421
IL7-5/WTpooled0.691161
IL7-3/WTpooled1.288581
IL12-4/WTpooled0.934881
IL1-4/WTpooled1.026221
WT/WTpooled1.032031

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.882080.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.066810.921
DC3000/delta hrp 6h0.89370.95
DC3000/delta hrp 12h0.93461
DC3000/delta hrp 24h1.053060.71

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.130710.11
DC3000 delta B/DC3000 delta AB1.110960.311

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.937831
Exp 36h1.180681
Exp 60h1.008481

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02071
Var 0h0.968481
Var 12h I row2-row11.036450.692
Var 12h NI row2-row10.982820.906
Var 36h I row2-row11.113061
Var 36h NI row2-row10.885090.645
Var 60h I row2-row10.993481
Var 60h NI row2-row11.087570.904
Time course 0hI-0hNI1.086060.413
Time course 12hI-12hNI1.017560.811
Time course 36hI-36hNI0.980260.58
Time course 60hI-60hNI1.264470.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.918410.314
transgenic ySAMdc/azygous control (breaker)0.78990.142
transgenic ySAMdc/azygous control (red)0.968981

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.99630.757

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.757860.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.827721
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.147590.222