Expression of 1-1-5.3.9.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.918270.568
27DAP/17DAP0.963940.966
39DAP/27DAP1.023541
41DAP/39DAP0.825420.346
42DAP/41DAP0.877650.774
43DAP/42DAP0.951920.89
47DAP/43DAP1.025450.856
52DAP/47DAP1.08020.906
57DAP/52DAP1.171290.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.404140.081
17DAP/reference1.199860.016
27DAP/reference1.155390.175
39DAP/reference1.161050.076
41DAP/reference1.152150.038
42DAP/reference1.113080.048
43DAP/reference1.09340.202
47DAP/reference0.973390.445
52DAP/reference0.904250.244
57DAP/reference0.820860.034

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.046360.65
27DAP/17DAP0.937960.782
39DAP/27DAP1.061890.626
41DAP/39DAP1.073570.774
42DAP/41DAP0.938660.524
43DAP/42DAP0.960870.597
47DAP/43DAP0.986790.954
52DAP/47DAP0.999220.962
57DAP/52DAP0.98450.763
57DAP/7DAP0.993241

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.217630.141
17DAP/reference1.106570.221
27DAP/reference1.177820.035
39DAP/reference1.237850.141
41DAP/reference1.003170.778
42DAP/reference1.148670.405
43DAP/reference1.069560.672
47DAP/reference1.139490.324
52DAP/reference1.002490.621
57DAP/reference1.172230.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.46360.041
17DAP/reference1.318820.012
27DAP/reference1.291480.07
39DAP/reference1.079610.588
41DAP/reference1.117670.513
42DAP/reference0.960840.392
43DAP/reference1.225780.035
47DAP/reference0.902550.164
52DAP/reference1.101170.259
57DAP/reference1.191060.108

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.139540.106
17DAP/reference1.232240.166
27DAP/reference1.037810.721
39DAP/reference1.055980.613
41DAP/reference1.063630.455
42DAP/reference1.003921
43DAP/reference0.863150.076
47DAP/reference0.915620.215
52DAP/reference1.002570.946
57DAP/reference0.82860.033

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.200260.966
26DAP/20DAP1.024961
34DAP/26DAP1.13970.819
51DAP/34DAP1.064040.936
52DAP/51DAP1.112610.542
53DAP/52DAP0.964970.848
55DAP/53DAP0.851760.13
57DAP/55DAP0.766970.246
62DAP/57DAP1.090910.935
68DAP/62DAP0.653570.166
68DAP/14DAP1.27850.936

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.075220.439

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.852440.356
Mature Green Tomato/Ripe Tomato1.668770.053
Immature Eggplant/Mature Eggplant0.754180.111
Ripe Pepper/Ripe Tomato2.860131
Mature Eggplant/Ripe Tomato1.473590.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.96268
1-1-2/M821.068561
12-2/M820.592110.623
12-4/M820.805030.619
1-3/M820.94357
2-1-1/M82N/AN/A
2-1/M820.90922
2-6/M821.479771
3-2/M820.78009
4-1-1/M820.922481
4-1/M821.315330.512
4-3-2/M821.203710.241
4-3/M820.660440.611
5-3/M821.550390.447
6-2/M820.46233
6-3/M820.956341
7-1/M82N/AN/A
7-2/M821.18635
9-3-2/M821.096251

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.121261
IL2-6/WTpooled0.92561
IL7-5/WTpooled0.56966
IL7-3/WTpooled0.989261
IL12-4/WTpooled1.143560.785
IL1-4/WTpooled0.892550.834
WT/WTpooled1.008841

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.846460.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.964731
DC3000/delta hrp 6h1.117321
DC3000/delta hrp 12h1.097311
DC3000/delta hrp 24h0.968150.818

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.137810.081
DC3000 delta B/DC3000 delta AB1.092140.415

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.104991
Exp 36h1.04991
Exp 60h1.069411

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020971
Var 0h1.258780.421
Var 12h I row2-row10.827320.338
Var 12h NI row2-row11.065281
Var 36h I row2-row11.153910.41
Var 36h NI row2-row10.886640.45
Var 60h I row2-row10.926040.952
Var 60h NI row2-row10.82310.458
Time course 0hI-0hNI1.010381
Time course 12hI-12hNI1.028170.747
Time course 36hI-36hNI1.16330.05
Time course 60hI-60hNI1.395530.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.979750.614
transgenic ySAMdc/azygous control (breaker)1.196630.165
transgenic ySAMdc/azygous control (red)1.04351

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.05990.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.999591

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.994181
Manapal/WT (break)1.669860.381
Manapal/WT (red)1.056721