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Expression of 1-1-5.3.9.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.966560.743
27DAP/17DAP1.06560.905
39DAP/27DAP0.868630.549
41DAP/39DAP1.291540.451
42DAP/41DAP1.055541
43DAP/42DAP1.054381
47DAP/43DAP0.927460.716
52DAP/47DAP1.135910.811
57DAP/52DAP1.101910.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.981860.589
17DAP/reference0.969610.448
27DAP/reference0.942840.349
39DAP/reference1.034070.359
41DAP/reference1.027570.451
42DAP/reference0.907020.004
43DAP/reference1.05780.306
47DAP/reference0.895790.06
52DAP/reference0.809550.05
57DAP/reference0.831470.045

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991210.826
27DAP/17DAP0.999310.969
39DAP/27DAP1.070640.626
41DAP/39DAP1.021160.921
42DAP/41DAP1.15580.46
43DAP/42DAP1.046110.554
47DAP/43DAP1.033450.939
52DAP/47DAP0.954880.907
57DAP/52DAP0.978660.753
57DAP/7DAP1.531650.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902250.138
17DAP/reference0.902830.031
27DAP/reference0.85460.016
39DAP/reference0.884340.011
41DAP/reference0.877430.027
42DAP/reference0.860170.029
43DAP/reference0.876510.056
47DAP/reference0.889230.293
52DAP/reference0.850020.046
57DAP/reference0.868520.022

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.061310.491
17DAP/reference1.048650.32
27DAP/reference0.895970.203
39DAP/reference0.898410.117
41DAP/reference0.964760.212
42DAP/reference0.782840.011
43DAP/reference1.103450.479
47DAP/reference0.905560.107
52DAP/reference0.928780.203
57DAP/reference1.144950.437

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.903660.041
17DAP/reference0.989610.763
27DAP/reference0.823610.036
39DAP/reference0.821160.009
41DAP/reference0.825610.058
42DAP/reference0.841040.22
43DAP/reference0.782690.171
47DAP/reference0.898040.296
52DAP/reference0.881950.31
57DAP/reference0.488540.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.060260.966
26DAP/20DAP1.088660.663
34DAP/26DAP0.856570.214
51DAP/34DAP1.228720.058
52DAP/51DAP0.991891
53DAP/52DAP0.91291N/A
55DAP/53DAP0.921190.686
57DAP/55DAP1.087770.779
62DAP/57DAP1.121730.515
68DAP/62DAP1.072361
68DAP/14DAP0.951471

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.96920.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.591220.127
Mature Green Tomato/Ripe Tomato1.006540.835
Immature Eggplant/Mature Eggplant1.129720.23
Ripe Pepper/Ripe Tomato2.750381
Mature Eggplant/Ripe Tomato1.325630.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.922880.883
1-1-2/M820.904471
12-2/M821.16340.61
12-4/M820.93291
1-3/M820.890630.441
2-1-1/M821.478890.689
2-1/M821.136361
2-6/M821.018411
3-2/M821.022660.967
4-1-1/M820.921291
4-1/M820.940591
4-3-2/M820.825620.487
4-3/M820.796891
5-3/M821.052491
6-2/M820.936861
6-3/M820.916620.982
7-1/M820.67345N/A
7-2/M821.132180.385
9-3-2/M820.872010.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.007421
IL7-5/WTpooled1.27818N/A
IL7-3/WTpooled0.886490.418
IL12-4/WTpooled0.887720.71
IL1-4/WTpooled1.034431
WT/WTpooled0.966871

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.314940.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.071670.758
DC3000/delta hrp 6h0.966170.95
DC3000/delta hrp 12h1.207051
DC3000/delta hrp 24h1.11320.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.294230.121
DC3000 delta B/DC3000 delta AB1.297450.128

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.175481
Exp 36h1.140991
Exp 60h1.295960.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99261
Var 0h1.222440.421
Var 12h I row2-row11.032570.736
Var 12h NI row2-row11.05951
Var 36h I row2-row10.96731
Var 36h NI row2-row10.893470.478
Var 60h I row2-row11.033881
Var 60h NI row2-row10.91740.756
Time course 0hI-0hNI1.094070.662
Time course 12hI-12hNI1.02380.77
Time course 36hI-36hNI1.271290.007
Time course 60hI-60hNI2.519960.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.007340.612
transgenic ySAMdc/azygous control (breaker)1.176521
transgenic ySAMdc/azygous control (red)0.975141

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.026460.125

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.655040.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.076660.307
Manapal/WT (break)0.879221
Manapal/WT (red)0.717460.183