Expression of 1-1-5.3.9.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80805 | 0.221 |
27DAP/17DAP | 0.95076 | 0.939 |
39DAP/27DAP | 0.82889 | 0.462 |
41DAP/39DAP | 1.30744 | 0.328 |
42DAP/41DAP | 0.97134 | 1 |
43DAP/42DAP | 0.94746 | 0.877 |
47DAP/43DAP | 0.87048 | 0.584 |
52DAP/47DAP | 1.21323 | 0.641 |
57DAP/52DAP | 0.96558 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93599 | 0.293 |
17DAP/reference | 0.9579 | 0.474 |
27DAP/reference | 0.90455 | 0.152 |
39DAP/reference | 0.95151 | 0.174 |
41DAP/reference | 0.95138 | 0.267 |
42DAP/reference | 0.86759 | 0.002 |
43DAP/reference | 0.93924 | 0.211 |
47DAP/reference | 0.88591 | 0.005 |
52DAP/reference | 0.88856 | 0.086 |
57DAP/reference | 0.87525 | 0.062 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99136 | 0.801 |
27DAP/17DAP | 1.02643 | 0.957 |
39DAP/27DAP | 0.98162 | 0.881 |
41DAP/39DAP | 1.05819 | 1 |
42DAP/41DAP | 1.0435 | 0.852 |
43DAP/42DAP | 1.00477 | 1 |
47DAP/43DAP | 0.95391 | 0.75 |
52DAP/47DAP | 1.03347 | 0.892 |
57DAP/52DAP | 0.96029 | 0.501 |
57DAP/7DAP | 1.09234 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90015 | 0.183 |
17DAP/reference | 0.97979 | 0.012 |
27DAP/reference | 0.98813 | 0.53 |
39DAP/reference | 0.92622 | 0.043 |
41DAP/reference | 0.78171 | 0.011 |
42DAP/reference | 0.79378 | 0.01 |
43DAP/reference | 0.89599 | 0.151 |
47DAP/reference | 0.89468 | 0.383 |
52DAP/reference | 0.90225 | 0.097 |
57DAP/reference | 0.87171 | 0.215 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05627 | 0.325 |
17DAP/reference | 0.94513 | 0.239 |
27DAP/reference | 0.98491 | 0.598 |
39DAP/reference | 0.93142 | 0.144 |
41DAP/reference | 0.98955 | 0.557 |
42DAP/reference | 0.91451 | 0.067 |
43DAP/reference | 0.98567 | 0.692 |
47DAP/reference | 0.93718 | 0.188 |
52DAP/reference | 0.97543 | 0.469 |
57DAP/reference | 0.95332 | 0.433 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93459 | 0.074 |
17DAP/reference | 1.00467 | 1 |
27DAP/reference | 0.96433 | 0.319 |
39DAP/reference | 0.98068 | 0.464 |
41DAP/reference | 0.9358 | 0.064 |
42DAP/reference | 0.98381 | 0.671 |
43DAP/reference | 0.95569 | 0.131 |
47DAP/reference | 1.02636 | 1 |
52DAP/reference | 0.96056 | 0.596 |
57DAP/reference | 1.00742 | 0.842 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94678 | 1 |
26DAP/20DAP | 0.87567 | 0.512 |
34DAP/26DAP | 0.98322 | 0.988 |
51DAP/34DAP | 1.07515 | 0.637 |
52DAP/51DAP | 1.03024 | 0.836 |
53DAP/52DAP | 0.83179 | 0.235 |
55DAP/53DAP | 1.08549 | 0.584 |
57DAP/55DAP | 0.98704 | 0.902 |
62DAP/57DAP | 1.06364 | 0.767 |
68DAP/62DAP | 0.83412 | 0.29 |
68DAP/14DAP | 0.89584 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93859 | 0.422 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.06996 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.15194 | 0.69 |
Immature Eggplant/Mature Eggplant | 0.88468 | 0.125 |
Ripe Pepper/Ripe Tomato | 1.27391 | 1 |
Mature Eggplant/Ripe Tomato | 2.53156 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.82493 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.84515 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.89955 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.63665 | |
4-3-2/M82 | 1.0275 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.79068 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.01967 | 0.788 |
IL7-5/WTpooled | 1.5175 | |
IL7-3/WTpooled | 0.80545 | 0.31 |
IL12-4/WTpooled | 0.98057 | 1 |
IL1-4/WTpooled | 0.91405 | 0.834 |
WT/WTpooled | 1.00146 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96953 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.89484 | 1 |
DC3000/delta hrp 6h | 1.00245 | 0.95 |
DC3000/delta hrp 12h | 0.90156 | 1 |
DC3000/delta hrp 24h | 0.43674 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.71276 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.75578 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.84288 | 1 |
Exp 36h | 0.64132 | 0.406 |
Exp 60h | 0.67875 | 0.251 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03884 | 1 |
Var 0h | 0.97936 | 1 |
Var 12h I row2-row1 | 0.83571 | 0.418 |
Var 12h NI row2-row1 | 0.95108 | 0.357 |
Var 36h I row2-row1 | 0.98528 | 1 |
Var 36h NI row2-row1 | 1.22456 | 1 |
Var 60h I row2-row1 | 1.02886 | 1 |
Var 60h NI row2-row1 | 1.06048 | 0.904 |
Time course 0hI-0hNI | 0.91888 | 0.308 |
Time course 12hI-12hNI | 1.04668 | 0.73 |
Time course 36hI-36hNI | 0.94938 | 0.171 |
Time course 60hI-60hNI | 0.54128 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06679 | 0.397 |
transgenic ySAMdc/azygous control (breaker) | 1.09813 | 1 |
transgenic ySAMdc/azygous control (red) | 1.15009 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02203 | 0.334 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.08205 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.10034 | 0.096 |
Manapal/WT (break) | 2.7314 | 0.126 |
Manapal/WT (red) | 1.16677 | 1 |
|
|