Expression of 1-1-5.3.9.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.808050.221
27DAP/17DAP0.950760.939
39DAP/27DAP0.828890.462
41DAP/39DAP1.307440.328
42DAP/41DAP0.971341
43DAP/42DAP0.947460.877
47DAP/43DAP0.870480.584
52DAP/47DAP1.213230.641
57DAP/52DAP0.965580.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.935990.293
17DAP/reference0.95790.474
27DAP/reference0.904550.152
39DAP/reference0.951510.174
41DAP/reference0.951380.267
42DAP/reference0.867590.002
43DAP/reference0.939240.211
47DAP/reference0.885910.005
52DAP/reference0.888560.086
57DAP/reference0.875250.062

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991360.801
27DAP/17DAP1.026430.957
39DAP/27DAP0.981620.881
41DAP/39DAP1.058191
42DAP/41DAP1.04350.852
43DAP/42DAP1.004771
47DAP/43DAP0.953910.75
52DAP/47DAP1.033470.892
57DAP/52DAP0.960290.501
57DAP/7DAP1.092341

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.900150.183
17DAP/reference0.979790.012
27DAP/reference0.988130.53
39DAP/reference0.926220.043
41DAP/reference0.781710.011
42DAP/reference0.793780.01
43DAP/reference0.895990.151
47DAP/reference0.894680.383
52DAP/reference0.902250.097
57DAP/reference0.871710.215

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.056270.325
17DAP/reference0.945130.239
27DAP/reference0.984910.598
39DAP/reference0.931420.144
41DAP/reference0.989550.557
42DAP/reference0.914510.067
43DAP/reference0.985670.692
47DAP/reference0.937180.188
52DAP/reference0.975430.469
57DAP/reference0.953320.433

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934590.074
17DAP/reference1.004671
27DAP/reference0.964330.319
39DAP/reference0.980680.464
41DAP/reference0.93580.064
42DAP/reference0.983810.671
43DAP/reference0.955690.131
47DAP/reference1.026361
52DAP/reference0.960560.596
57DAP/reference1.007420.842

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.946781
26DAP/20DAP0.875670.512
34DAP/26DAP0.983220.988
51DAP/34DAP1.075150.637
52DAP/51DAP1.030240.836
53DAP/52DAP0.831790.235
55DAP/53DAP1.085490.584
57DAP/55DAP0.987040.902
62DAP/57DAP1.063640.767
68DAP/62DAP0.834120.29
68DAP/14DAP0.895840.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.938590.422

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.069960.417
Mature Green Tomato/Ripe Tomato1.151940.69
Immature Eggplant/Mature Eggplant0.884680.125
Ripe Pepper/Ripe Tomato1.273911
Mature Eggplant/Ripe Tomato2.53156

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.82493
12-2/M82N/AN/A
12-4/M820.84515
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.89955
4-1-1/M82N/AN/A
4-1/M820.63665
4-3-2/M821.02751
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.790680.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.019670.788
IL7-5/WTpooled1.5175
IL7-3/WTpooled0.805450.31
IL12-4/WTpooled0.980571
IL1-4/WTpooled0.914050.834
WT/WTpooled1.001461

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.969531

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.894841
DC3000/delta hrp 6h1.002450.95
DC3000/delta hrp 12h0.901561
DC3000/delta hrp 24h0.436740.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.712760.023
DC3000 delta B/DC3000 delta AB0.755780.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.842881
Exp 36h0.641320.406
Exp 60h0.678750.251

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.038841
Var 0h0.979361
Var 12h I row2-row10.835710.418
Var 12h NI row2-row10.951080.357
Var 36h I row2-row10.985281
Var 36h NI row2-row11.224561
Var 60h I row2-row11.028861
Var 60h NI row2-row11.060480.904
Time course 0hI-0hNI0.918880.308
Time course 12hI-12hNI1.046680.73
Time course 36hI-36hNI0.949380.171
Time course 60hI-60hNI0.541280.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.066790.397
transgenic ySAMdc/azygous control (breaker)1.098131
transgenic ySAMdc/azygous control (red)1.150090.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.022030.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.082051

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.100340.096
Manapal/WT (break)2.73140.126
Manapal/WT (red)1.166771