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Expression of 1-1-5.3.9.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.950120.671
27DAP/17DAP1.038960.92
39DAP/27DAP0.979690.749
41DAP/39DAP1.139260.549
42DAP/41DAP1.117370.916
43DAP/42DAP1.05391
47DAP/43DAP1.146480.769
52DAP/47DAP0.863650.618
57DAP/52DAP1.019210.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.217540.11
17DAP/reference0.961030.567
27DAP/reference0.884480.032
39DAP/reference1.038220.615
41DAP/reference0.890970.154
42DAP/reference1.114320.039
43DAP/reference1.139220.04
47DAP/reference1.029040.666
52DAP/reference0.874150.147
57DAP/reference1.039620.511

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.915490.238
27DAP/17DAP1.051370.811
39DAP/27DAP1.067870.534
41DAP/39DAP1.144860.14
42DAP/41DAP0.929910.425
43DAP/42DAP1.049630.25
47DAP/43DAP1.019410.884
52DAP/47DAP0.989850.925
57DAP/52DAP0.945260.531
57DAP/7DAP0.926851

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.115940.511
17DAP/reference0.922810.192
27DAP/reference1.177490.026
39DAP/reference1.063610.865
41DAP/reference1.050750.491
42DAP/reference1.378940.059
43DAP/reference0.892670.059
47DAP/reference1.128190.195
52DAP/reference1.198930.266
57DAP/reference1.024131

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.37980.049
17DAP/reference1.086370.243
27DAP/reference1.118550.338
39DAP/reference0.979820.485
41DAP/reference1.091370.831
42DAP/reference1.220460.051
43DAP/reference1.325170.096
47DAP/reference1.417820.014
52DAP/reference0.788940.121
57DAP/reference1.021320.908

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.307690.02
17DAP/reference0.972280.624
27DAP/reference0.980.594
39DAP/reference1.040260.836
41DAP/reference0.999160.826
42DAP/reference0.947750.361
43DAP/reference1.058510.895
47DAP/reference0.977290.478
52DAP/reference1.010330.821
57DAP/reference0.994010.79

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.890420.915
26DAP/20DAP0.998581
34DAP/26DAP0.953080.693
51DAP/34DAP0.99920.957
52DAP/51DAP0.983841
53DAP/52DAP1.040280.768
55DAP/53DAP1.091070.634
57DAP/55DAP1.236430.694
62DAP/57DAP0.876380.681
68DAP/62DAP0.8820.641
68DAP/14DAP0.7030.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.918620.211

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.761080.265
Mature Green Tomato/Ripe Tomato0.872080.132
Immature Eggplant/Mature Eggplant1.308710.055
Ripe Pepper/Ripe Tomato0.844540.293
Mature Eggplant/Ripe Tomato0.670640.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.91762N/A
1-1-2/M820.906520.754
12-2/M82N/AN/A
12-4/M820.78344N/A
1-3/M82N/AN/A
2-1-1/M820.9814N/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.16002N/A
4-1-1/M82N/AN/A
4-1/M821.16964N/A
4-3-2/M821.029641
4-3/M82N/AN/A
5-3/M820.814530.49
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.02741

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.930350.321
IL2-6/WTpooled0.804941
IL7-5/WTpooled0.945251
IL7-3/WTpooled1.361560.362
IL12-4/WTpooled0.946381
IL1-4/WTpooled1.048851
WT/WTpooled1.062950.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.420280.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.987461
DC3000/delta hrp 6h1.049521
DC3000/delta hrp 12h1.018931
DC3000/delta hrp 24h0.548670.036

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.048050.313
DC3000 delta B/DC3000 delta AB1.359960.086

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.064431
Exp 36h1.656670.349
Exp 60h1.415920.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.019561
Var 0h1.199710.594
Var 12h I row2-row10.79080.467
Var 12h NI row2-row11.445260.281
Var 36h I row2-row11.311850.742
Var 36h NI row2-row10.548160.478
Var 60h I row2-row10.88490.582
Var 60h NI row2-row10.816320.458
Time course 0hI-0hNI1.071620.799
Time course 12hI-12hNI1.120220.672
Time course 36hI-36hNI3.181290.004
Time course 60hI-60hNI11.95620.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.068710.289
transgenic ySAMdc/azygous control (breaker)1.107781
transgenic ySAMdc/azygous control (red)1.245230.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.097040.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.343030.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.120620.307
Manapal/WT (break)1.142091
Manapal/WT (red)1.231831