Expression of 1-1-5.3.9.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79898 | 0.073 |
27DAP/17DAP | 0.88474 | 0.72 |
39DAP/27DAP | 0.97988 | 0.733 |
41DAP/39DAP | 1.04217 | 1 |
42DAP/41DAP | 0.96214 | 1 |
43DAP/42DAP | 0.99602 | 0.937 |
47DAP/43DAP | 0.99957 | 0.972 |
52DAP/47DAP | 1.01606 | 0.982 |
57DAP/52DAP | 1.21645 | 0.77 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42352 | 0.027 |
17DAP/reference | 1.02937 | 1 |
27DAP/reference | 0.84271 | 0.032 |
39DAP/reference | 0.91024 | 0.324 |
41DAP/reference | 0.83491 | 0.085 |
42DAP/reference | 1.03281 | 1 |
43DAP/reference | 0.95091 | 0.519 |
47DAP/reference | 1.00342 | 0.764 |
52DAP/reference | 0.79519 | 0.038 |
57DAP/reference | 0.93033 | 0.221 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.70377 | 0.038 |
27DAP/17DAP | 1.0964 | 0.658 |
39DAP/27DAP | 0.8749 | 0.3 |
41DAP/39DAP | 1.02516 | 0.849 |
42DAP/41DAP | 0.99302 | 0.853 |
43DAP/42DAP | 1.10806 | 0.192 |
47DAP/43DAP | 1.00004 | 1 |
52DAP/47DAP | 1.00015 | 0.987 |
57DAP/52DAP | 1.07996 | 0.489 |
57DAP/7DAP | 0.7333 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.81407 | 0.024 |
17DAP/reference | 1.16194 | 0.244 |
27DAP/reference | 0.83463 | 0.058 |
39DAP/reference | 1.16107 | 0.107 |
41DAP/reference | 1.0201 | 0.977 |
42DAP/reference | 0.98131 | 0.436 |
43DAP/reference | 0.91253 | 0.032 |
47DAP/reference | 1.07146 | 0.932 |
52DAP/reference | 0.89042 | 0.027 |
57DAP/reference | 0.77666 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50206 | 0.037 |
17DAP/reference | 1.1187 | 0.139 |
27DAP/reference | 1.09312 | 0.781 |
39DAP/reference | 0.88283 | 0.173 |
41DAP/reference | 1.04084 | 1 |
42DAP/reference | 1.1149 | 0.144 |
43DAP/reference | 0.82596 | 0.157 |
47DAP/reference | 1.07024 | 0.353 |
52DAP/reference | 0.68535 | 0.009 |
57DAP/reference | 0.77179 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.61245 | 0.018 |
17DAP/reference | 1.28936 | 0.303 |
27DAP/reference | 1.01552 | 0.834 |
39DAP/reference | 0.98763 | 0.643 |
41DAP/reference | 0.9834 | 0.682 |
42DAP/reference | 0.95053 | 0.552 |
43DAP/reference | 1.0409 | 0.565 |
47DAP/reference | 0.94926 | 0.286 |
52DAP/reference | 1.08722 | 0.801 |
57DAP/reference | 0.96637 | 0.483 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09065 | 0.966 |
26DAP/20DAP | 1.05641 | 0.778 |
34DAP/26DAP | 1.08655 | 1 |
51DAP/34DAP | 1.17621 | 0.281 |
52DAP/51DAP | 0.97772 | 1 |
53DAP/52DAP | 1.10678 | 0.444 |
55DAP/53DAP | 1.05066 | 0.994 |
57DAP/55DAP | 1.2946 | 0.626 |
62DAP/57DAP | 1.05926 | 1 |
68DAP/62DAP | 0.82103 | 0.263 |
68DAP/14DAP | 0.70402 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.15536 | 0.023 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.84856 | 0.312 |
Mature Green Tomato/Ripe Tomato | 0.93083 | 0.487 |
Immature Eggplant/Mature Eggplant | 1.27488 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.86658 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.64354 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98105 | 0.961 |
1-1-2/M82 | 1.06599 | 0.977 |
12-2/M82 | 0.97059 | 1 |
12-4/M82 | 0.88661 | 0.619 |
1-3/M82 | 1.70563 | 0.479 |
2-1-1/M82 | 1.30834 | 0.422 |
2-1/M82 | 0.91354 | 0.74 |
2-6/M82 | 0.90998 | 1 |
3-2/M82 | 1.56795 | 0.463 |
4-1-1/M82 | 1.05467 | 1 |
4-1/M82 | 1.1217 | 1 |
4-3-2/M82 | 1.20476 | 0.241 |
4-3/M82 | 1.34641 | 1 |
5-3/M82 | 1.15086 | 0.572 |
6-2/M82 | 0.84387 | |
6-3/M82 | 0.80318 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.3127 | 0.385 |
9-3-2/M82 | 1.06201 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.09686 | 0.493 |
IL2-6/WTpooled | 0.74397 | 0.473 |
IL7-5/WTpooled | 1.00739 | 1 |
IL7-3/WTpooled | 1.1681 | 1 |
IL12-4/WTpooled | 0.88258 | 0.71 |
IL1-4/WTpooled | 1.02404 | 1 |
WT/WTpooled | 0.9435 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02507 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01854 | 0.921 |
DC3000/delta hrp 6h | 0.92628 | 0.95 |
DC3000/delta hrp 12h | 1.03322 | 1 |
DC3000/delta hrp 24h | 1.71241 | 0.038 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.97403 | 1 |
DC3000 delta B/DC3000 delta AB | 1.17948 | 0.212 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9307 | 1 |
Exp 36h | 1.06254 | 1 |
Exp 60h | 1.0484 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00938 | 1 |
Var 0h | 0.99103 | 1 |
Var 12h I row2-row1 | 0.95212 | 0.705 |
Var 12h NI row2-row1 | 0.94064 | 0.713 |
Var 36h I row2-row1 | 1.1378 | 0.601 |
Var 36h NI row2-row1 | 0.98267 | 0.852 |
Var 60h I row2-row1 | 0.86891 | 0.582 |
Var 60h NI row2-row1 | 0.91406 | 0.818 |
Time course 0hI-0hNI | 0.94974 | 0.715 |
Time course 12hI-12hNI | 1.04133 | 0.65 |
Time course 36hI-36hNI | 1.10638 | 0.039 |
Time course 60hI-60hNI | 1.34387 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99083 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.7811 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.31289 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.19531 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.72676 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.12563 | 0.14 |
Manapal/WT (break) | 1.10716 | 0.381 |
Manapal/WT (red) | 1.26098 | 1 |
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