Expression of 1-1-5.3.9.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.798980.073
27DAP/17DAP0.884740.72
39DAP/27DAP0.979880.733
41DAP/39DAP1.042171
42DAP/41DAP0.962141
43DAP/42DAP0.996020.937
47DAP/43DAP0.999570.972
52DAP/47DAP1.016060.982
57DAP/52DAP1.216450.77

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.423520.027
17DAP/reference1.029371
27DAP/reference0.842710.032
39DAP/reference0.910240.324
41DAP/reference0.834910.085
42DAP/reference1.032811
43DAP/reference0.950910.519
47DAP/reference1.003420.764
52DAP/reference0.795190.038
57DAP/reference0.930330.221

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.703770.038
27DAP/17DAP1.09640.658
39DAP/27DAP0.87490.3
41DAP/39DAP1.025160.849
42DAP/41DAP0.993020.853
43DAP/42DAP1.108060.192
47DAP/43DAP1.000041
52DAP/47DAP1.000150.987
57DAP/52DAP1.079960.489
57DAP/7DAP0.73331

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.814070.024
17DAP/reference1.161940.244
27DAP/reference0.834630.058
39DAP/reference1.161070.107
41DAP/reference1.02010.977
42DAP/reference0.981310.436
43DAP/reference0.912530.032
47DAP/reference1.071460.932
52DAP/reference0.890420.027
57DAP/reference0.776660.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.502060.037
17DAP/reference1.11870.139
27DAP/reference1.093120.781
39DAP/reference0.882830.173
41DAP/reference1.040841
42DAP/reference1.11490.144
43DAP/reference0.825960.157
47DAP/reference1.070240.353
52DAP/reference0.685350.009
57DAP/reference0.771790.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.612450.018
17DAP/reference1.289360.303
27DAP/reference1.015520.834
39DAP/reference0.987630.643
41DAP/reference0.98340.682
42DAP/reference0.950530.552
43DAP/reference1.04090.565
47DAP/reference0.949260.286
52DAP/reference1.087220.801
57DAP/reference0.966370.483

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.090650.966
26DAP/20DAP1.056410.778
34DAP/26DAP1.086551
51DAP/34DAP1.176210.281
52DAP/51DAP0.977721
53DAP/52DAP1.106780.444
55DAP/53DAP1.050660.994
57DAP/55DAP1.29460.626
62DAP/57DAP1.059261
68DAP/62DAP0.821030.263
68DAP/14DAP0.704020.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.155360.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.848560.312
Mature Green Tomato/Ripe Tomato0.930830.487
Immature Eggplant/Mature Eggplant1.274880.05
Ripe Pepper/Ripe Tomato0.866580.293
Mature Eggplant/Ripe Tomato0.643540.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.981050.961
1-1-2/M821.065990.977
12-2/M820.970591
12-4/M820.886610.619
1-3/M821.705630.479
2-1-1/M821.308340.422
2-1/M820.913540.74
2-6/M820.909981
3-2/M821.567950.463
4-1-1/M821.054671
4-1/M821.12171
4-3-2/M821.204760.241
4-3/M821.346411
5-3/M821.150860.572
6-2/M820.84387
6-3/M820.80318
7-1/M82N/AN/A
7-2/M821.31270.385
9-3-2/M821.062011

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.096860.493
IL2-6/WTpooled0.743970.473
IL7-5/WTpooled1.007391
IL7-3/WTpooled1.16811
IL12-4/WTpooled0.882580.71
IL1-4/WTpooled1.024041
WT/WTpooled0.94351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.025071

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.018540.921
DC3000/delta hrp 6h0.926280.95
DC3000/delta hrp 12h1.033221
DC3000/delta hrp 24h1.712410.038

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.974031
DC3000 delta B/DC3000 delta AB1.179480.212

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.93071
Exp 36h1.062541
Exp 60h1.04841

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.009381
Var 0h0.991031
Var 12h I row2-row10.952120.705
Var 12h NI row2-row10.940640.713
Var 36h I row2-row11.13780.601
Var 36h NI row2-row10.982670.852
Var 60h I row2-row10.868910.582
Var 60h NI row2-row10.914060.818
Time course 0hI-0hNI0.949740.715
Time course 12hI-12hNI1.041330.65
Time course 36hI-36hNI1.106380.039
Time course 60hI-60hNI1.343870.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.990830.862
transgenic ySAMdc/azygous control (breaker)1.78110.178
transgenic ySAMdc/azygous control (red)1.312890.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.195310.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.726760.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.125630.14
Manapal/WT (break)1.107160.381
Manapal/WT (red)1.260981