Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.4.1.1

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.98658	0.811
27DAP/17DAP	0.90538	0.779
39DAP/27DAP	0.61832	0.474
41DAP/39DAP	1.43184	0.85
42DAP/41DAP	2.09848	0.773
43DAP/42DAP	0.67777	0.589
47DAP/43DAP	0.71694	0.234
52DAP/47DAP	1.23068	0.922
57DAP/52DAP	0.52537	0.431

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.68404	0.064
17DAP/reference	0.91886	0.129
27DAP/reference	0.94778	0.552
39DAP/reference	0.90541	0.254
41DAP/reference	0.82427	0.085
42DAP/reference	1.44261	0.007
43DAP/reference	1.06916	0.705
47DAP/reference	1.38445	0.089
52DAP/reference	1.11541	0.186
57DAP/reference	0.98991	0.61

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.15169	0.87
27DAP/17DAP	N/A	N/A
39DAP/27DAP	N/A	N/A
41DAP/39DAP	0.74767	0.885
42DAP/41DAP	0.73644	0.353
43DAP/42DAP	1.03393	1
47DAP/43DAP	0.75031
52DAP/47DAP	1.09552	0.785
57DAP/52DAP	1.02485	0.869
57DAP/7DAP	0.59111	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.81142	0.129
17DAP/reference	0.9817	0.518
27DAP/reference	1.4733	0.008
39DAP/reference	0.84349	0.049
41DAP/reference	0.84168	0.133
42DAP/reference	0.82651	0.012
43DAP/reference	0.713	0.017
47DAP/reference	0.86157	0.222
52DAP/reference	0.74274	0.027
57DAP/reference	0.70376	0.012

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.6457	0.412
17DAP/reference	0.69568	0.208
27DAP/reference	N/A	N/A
39DAP/reference	0.80392	0.227
41DAP/reference	2.1498
42DAP/reference	N/A	N/A
43DAP/reference	1.76014	0.016
47DAP/reference	2.25443	0.008
52DAP/reference	1.16202	0.417
57DAP/reference	0.76695	0.259

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.9184	0.335
17DAP/reference	0.9168	0.426
27DAP/reference	1.14426	0.871
39DAP/reference	0.86548	0.033
41DAP/reference	1.01297	1
42DAP/reference	1.55058	0.023
43DAP/reference	1.02183	0.796
47DAP/reference	0.63828	0.049
52DAP/reference	2.17736	0.186
57DAP/reference	1.41033	0.481

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.79568	1
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.11753	1
51DAP/34DAP	1.25656	0.883
52DAP/51DAP	1.20144	0.808
53DAP/52DAP	0.57264	0.138
55DAP/53DAP	1.35821	0.519
57DAP/55DAP	N/A	N/A
62DAP/57DAP	1.8617
68DAP/62DAP	N/A	N/A
68DAP/14DAP	0.98764	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.01979	1

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.00827	1
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	1.08303	1
IL7-3/WTpooled	0.92499	1
IL12-4/WTpooled	0.86325	0.71
IL1-4/WTpooled	1.48584	1
WT/WTpooled	0.90705	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	0.65831	1
Manapal/WT (red)	N/A	N/A