Expression of 1-1-5.4.1.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.299440.575
27DAP/17DAP1.614740.688
39DAP/27DAP2.210310.369
41DAP/39DAP1.184860.85
42DAP/41DAP0.868211
43DAP/42DAP1.792580.772
47DAP/43DAP0.950660.744
52DAP/47DAP1.072410.821
57DAP/52DAP1.43911

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.940280.645
17DAP/reference0.679920.029
27DAP/reference0.85780.295
39DAP/reference0.6861
41DAP/reference1.139061
42DAP/reference1.184240.276
43DAP/reference0.97073
47DAP/reference0.977010.602
52DAP/reference1.507360.242
57DAP/reference0.955670.553

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.94710.697
27DAP/17DAP1.169130.9
39DAP/27DAP1.299910.626
41DAP/39DAP0.94607
42DAP/41DAP1.091061
43DAP/42DAP0.80963
47DAP/43DAP0.580850.01
52DAP/47DAP0.975890.905
57DAP/52DAP0.48018
57DAP/7DAP1.298520.207

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.923720.445
17DAP/reference0.96850.447
27DAP/reference1.239560.371
39DAP/reference1.082360.779
41DAP/reference1.005790.677
42DAP/reference1.266060.076
43DAP/reference1.134160.344
47DAP/reference3.12027
52DAP/reference0.90210.254
57DAP/reference0.943170.382

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.64509
17DAP/referenceN/AN/A
27DAP/reference1.464180.583
39DAP/reference0.64143
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/reference0.853520.298
47DAP/reference2.76354
52DAP/reference1.338740.988
57DAP/reference1.18228

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952250.526
17DAP/reference0.82882
27DAP/reference1.238360.105
39DAP/reference0.669620.009
41DAP/reference0.672960.371
42DAP/reference0.60008
43DAP/reference0.657130.008
47DAP/reference0.36417
52DAP/reference0.834220.562
57DAP/reference1.18614

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.46025
26DAP/20DAPN/AN/A
34DAP/26DAP0.69846
51DAP/34DAP1.791980.303
52DAP/51DAP0.72482
53DAP/52DAP0.854190.484
55DAP/53DAP1.171240.719
57DAP/55DAP0.23576
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAP2.31787

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.129010.496

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.802140.321
IL2-6/WTpooled0.9041
IL7-5/WTpooled0.810731
IL7-3/WTpooled0.861970.418
IL12-4/WTpooled0.934791
IL1-4/WTpooled1.018891
WT/WTpooled0.981241

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.028681
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A