Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.4.1.3

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.60041	0.656
27DAP/17DAP	0.94805	0.967
39DAP/27DAP	0.99423	0.749
41DAP/39DAP	0.80065	0.353
42DAP/41DAP	1.34642	0.974
43DAP/42DAP	1.48374	0.873
47DAP/43DAP	1.02874	0.84
52DAP/47DAP	1.21269	0.983
57DAP/52DAP	1.30599	0.962

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.45383	0.024
17DAP/reference	0.38658
27DAP/reference	N/A	N/A
39DAP/reference	N/A	N/A
41DAP/reference	1.23834	0.158
42DAP/reference	1.31484	0.005
43DAP/reference	1.0043
47DAP/reference	1.65474	0.024
52DAP/reference	0.80222	0.043
57DAP/reference	0.75428

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.96106	0.697
27DAP/17DAP	0.87324	0.782
39DAP/27DAP	4.12384	0.114
41DAP/39DAP	0.32768	0.013
42DAP/41DAP	1.97659	0.559
43DAP/42DAP	4.42991	0.013
47DAP/43DAP	0.84417	0.219
52DAP/47DAP	1.00942	0.905
57DAP/52DAP	1.03355	0.992
57DAP/7DAP	0.96781	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.24101	0.087
17DAP/reference	0.99098	0.599
27DAP/reference	1.06638	0.664
39DAP/reference	1.02199	0.634
41DAP/reference	1.10587	0.46
42DAP/reference	0.90876	0.136
43DAP/reference	0.86432	0.115
47DAP/reference	0.81022	0.101
52DAP/reference	1.00391	0.74
57DAP/reference	0.93193	0.176

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.66139
17DAP/reference	N/A	N/A
27DAP/reference	0.43326
39DAP/reference	N/A	N/A
41DAP/reference	2.64494	0.005
42DAP/reference	0.78951
43DAP/reference	0.83539	0.459
47DAP/reference	0.85406	0.11
52DAP/reference	3.19815
57DAP/reference	0.50958

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.013	0.804
17DAP/reference	1.06708	0.321
27DAP/reference	0.85768	0.065
39DAP/reference	0.99402	0.819
41DAP/reference	0.96465	0.56
42DAP/reference	0.83399	0.108
43DAP/reference	0.85369	0.226
47DAP/reference	2.08288	0.009
52DAP/reference	0.95884	0.65
57DAP/reference	1.10469	0.491

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.50424	0.817
26DAP/20DAP	1.7019	0.138
34DAP/26DAP	1.60893	1
51DAP/34DAP	1.07629	0.936
52DAP/51DAP	1.17377	0.965
53DAP/52DAP	2.0281	0.036
55DAP/53DAP	1.12938	0.976
57DAP/55DAP	0.40263	0.019
62DAP/57DAP	0.67249	0.028
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	2.04031

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.16155	0.277
IL2-6/WTpooled	1.14119	1
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.93049	1
IL12-4/WTpooled	1.14262	0.839
IL1-4/WTpooled	1.13841	1
WT/WTpooled	0.96871	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	2.11489	0.381
Manapal/WT (red)	N/A	N/A