Expression of 1-1-5.4.1.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.008050.911
27DAP/17DAP1.138080.975
39DAP/27DAP0.702260.39
41DAP/39DAP1.000090.772
42DAP/41DAP0.929991
43DAP/42DAP1.402520.929
47DAP/43DAP1.153880.809
52DAP/47DAP0.898070.678
57DAP/52DAP1.192820.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.36929
17DAP/reference1.907080.22
27DAP/reference1.801090.055
39DAP/reference0.811540.174
41DAP/reference0.823690.085
42DAP/reference1.790980.001
43DAP/reference1.825910.008
47DAP/reference1.443640.089
52DAP/reference1.01244
57DAP/reference1.503890.084

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.87619
27DAP/17DAP1.27779
39DAP/27DAP0.5597
41DAP/39DAP2.343810.006
42DAP/41DAP1.681330.334
43DAP/42DAPN/AN/A
47DAP/43DAP1.872750.951
52DAP/47DAP1.150660.71
57DAP/52DAP2.37086
57DAP/7DAP0.60849

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.111780.185
17DAP/reference1.10610.077
27DAP/reference1.029410.664
39DAP/reference1.324690.006
41DAP/reference1.40990.011
42DAP/reference1.37270.007
43DAP/reference1.390650.007
47DAP/reference1.449140.219
52DAP/reference1.658650.007
57DAP/reference1.259890.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.932710.124
17DAP/reference2.231030.022
27DAP/reference1.20120.471
39DAP/reference0.618870.089
41DAP/reference1.26150.199
42DAP/reference1.343520.259
43DAP/reference1.144990.986
47DAP/reference1.059031
52DAP/reference0.568480.01
57DAP/reference0.71860.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.93390.335
17DAP/reference0.988750.778
27DAP/reference0.859960.033
39DAP/reference0.925730.393
41DAP/reference1.113520.115
42DAP/reference1.176260.117
43DAP/reference1.225640.123
47DAP/reference1.111181
52DAP/reference0.98360.732
57DAP/reference1.916150.132

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.43632
26DAP/20DAP1.91871
34DAP/26DAP1.977411
51DAP/34DAPN/AN/A
52DAP/51DAP1.396970.253
53DAP/52DAP1.003370.876
55DAP/53DAP0.959430.82
57DAP/55DAP1.49408
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAP1.16464

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.42958
IL12-4/WTpooled0.485280.497
IL1-4/WTpooled1.743071
WT/WTpooled0.833791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A