Expression of 1-1-5.4.11.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.48778 | 0.014 |
27DAP/17DAP | 0.41648 | 0.027 |
39DAP/27DAP | 1.06241 | 0.769 |
41DAP/39DAP | 0.51821 | 0.049 |
42DAP/41DAP | 0.8109 | 0.774 |
43DAP/42DAP | 1.26923 | 0.69 |
47DAP/43DAP | 0.87478 | 0.562 |
52DAP/47DAP | 1.17866 | 0.786 |
57DAP/52DAP | 0.84043 | 0.82 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.73212 | 0.007 |
17DAP/reference | 2.05225 | 0.016 |
27DAP/reference | 2.46435 | 0.014 |
39DAP/reference | 0.73466 | 0.015 |
41DAP/reference | 0.62691 | 0.009 |
42DAP/reference | 0.84234 | 0.005 |
43DAP/reference | 0.46293 | 0.012 |
47DAP/reference | 0.43436 | 0.001 |
52DAP/reference | 0.52043 | 0.012 |
57DAP/reference | 0.53037 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.27901 | 0.025 |
27DAP/17DAP | 2.23019 | 0.02 |
39DAP/27DAP | 0.47556 | 0.032 |
41DAP/39DAP | 0.31135 | 0.013 |
42DAP/41DAP | 0.98177 | 0.753 |
43DAP/42DAP | 1.49965 | 0.018 |
47DAP/43DAP | 0.67452 | 0.021 |
52DAP/47DAP | 0.90953 | 0.634 |
57DAP/52DAP | 1.11225 | 0.851 |
57DAP/7DAP | 0.07374 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.73344 | 0.05 |
17DAP/reference | 1.31878 | 0.01 |
27DAP/reference | 1.32148 | 0.012 |
39DAP/reference | 0.97272 | 0.354 |
41DAP/reference | 0.87087 | 0.029 |
42DAP/reference | 1.0694 | 0.405 |
43DAP/reference | 0.89851 | 0.151 |
47DAP/reference | 0.64603 | 0.066 |
52DAP/reference | 1.0813 | 0.428 |
57DAP/reference | 0.94537 | 0.123 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.94384 | 0.063 |
17DAP/reference | 1.92975 | 0.018 |
27DAP/reference | 1.56295 | 0.149 |
39DAP/reference | 0.38962 | 0.007 |
41DAP/reference | 0.64041 | 0.006 |
42DAP/reference | 1.25295 | 0.369 |
43DAP/reference | 0.57844 | 0.005 |
47DAP/reference | 0.70805 | 0.027 |
52DAP/reference | 0.40785 | 0.004 |
57DAP/reference | 0.34517 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.74895 | 0.017 |
17DAP/reference | 1.80702 | 0.046 |
27DAP/reference | 1.68286 | 0.02 |
39DAP/reference | 1.04597 | 0.752 |
41DAP/reference | 1.06872 | 0.57 |
42DAP/reference | 1.01047 | 1 |
43DAP/reference | 0.7216 | 0.084 |
47DAP/reference | 0.34868 | 0.004 |
52DAP/reference | 0.71566 | 0.223 |
57DAP/reference | 0.50239 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.27556 | 0.43 |
26DAP/20DAP | 1.29994 | 0.394 |
34DAP/26DAP | 0.75208 | 0.286 |
51DAP/34DAP | 0.5396 | 0.049 |
52DAP/51DAP | 1.04205 | 0.708 |
53DAP/52DAP | 0.64232 | 0.049 |
55DAP/53DAP | 0.42192 | 0.016 |
57DAP/55DAP | 0.77294 | 0.246 |
62DAP/57DAP | 1.12019 | 0.767 |
68DAP/62DAP | 0.6736 | 0.177 |
68DAP/14DAP | 0.17726 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.11131 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.73099 | 0.058 |
Mature Green Tomato/Ripe Tomato | 3.73819 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.5907 | 0.07 |
Ripe Pepper/Ripe Tomato | 23.1395 | 0.258 |
Mature Eggplant/Ripe Tomato | 45.0388 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01556 | 1 |
1-1-2/M82 | 0.99236 | 1 |
12-2/M82 | 1.57635 | |
12-4/M82 | 0.95875 | 1 |
1-3/M82 | 0.82267 | 0.501 |
2-1-1/M82 | 1.21171 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.16908 | 0.594 |
3-2/M82 | 1.04385 | |
4-1-1/M82 | 0.9674 | 1 |
4-1/M82 | 0.90736 | 1 |
4-3-2/M82 | 0.77521 | 0.698 |
4-3/M82 | 0.92693 | 1 |
5-3/M82 | 0.90143 | 0.642 |
6-2/M82 | 0.68089 | |
6-3/M82 | 0.95171 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.94252 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.29264 | 0.365 |
IL2-6/WTpooled | 0.94066 | 1 |
IL7-5/WTpooled | 0.99912 | 1 |
IL7-3/WTpooled | 1.47347 | 0.362 |
IL12-4/WTpooled | 1.21031 | 0.538 |
IL1-4/WTpooled | 1.20736 | 1 |
WT/WTpooled | 0.95246 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91385 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97102 | 1 |
DC3000/delta hrp 6h | 0.9576 | 0.95 |
DC3000/delta hrp 12h | 0.76014 | 1 |
DC3000/delta hrp 24h | 0.80222 | 0.246 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.68323 | 0.041 |
DC3000 delta B/DC3000 delta AB | 0.53695 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.01073 | 1 |
Exp 36h | 0.91922 | 0.504 |
Exp 60h | 0.91088 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03877 | 1 |
Var 0h | 0.93009 | 0.933 |
Var 12h I row2-row1 | 0.93511 | 0.77 |
Var 12h NI row2-row1 | 0.91659 | 0.713 |
Var 36h I row2-row1 | 1.11492 | 0.41 |
Var 36h NI row2-row1 | 1.18976 | 1 |
Var 60h I row2-row1 | 1.00984 | 1 |
Var 60h NI row2-row1 | 1.00125 | 1 |
Time course 0hI-0hNI | 1.102 | 0.413 |
Time course 12hI-12hNI | 0.98611 | 0.931 |
Time course 36hI-36hNI | 0.87408 | 0.076 |
Time course 60hI-60hNI | 0.49154 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.84741 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 2.17934 | 1 |
transgenic ySAMdc/azygous control (red) | 1.01825 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.70568 | 0.064 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 3.11489 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.25422 | 0.14 |
Manapal/WT (break) | 1.79284 | 1 |
Manapal/WT (red) | 1.28586 | 1 |
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