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Expression of 1-1-5.4.12.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.830280.427
27DAP/17DAP0.970830.994
39DAP/27DAP1.248050.74
41DAP/39DAP0.968940.862
42DAP/41DAP3.380890.043
43DAP/42DAP1.1660.945
47DAP/43DAP2.093310.156
52DAP/47DAP0.472120.052
57DAP/52DAP1.312840.859

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.107750.188
17DAP/reference1.016290.813
27DAP/reference1.126520.179
39DAP/reference1.286020.015
41DAP/reference1.134090.062
42DAP/reference1.24570.062
43DAP/reference1.111110.095
47DAP/reference1.107470.558
52DAP/reference0.958030.416
57DAP/reference1.042590.643

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.407540.038
27DAP/17DAP1.232310.447
39DAP/27DAP1.111380.626
41DAP/39DAP0.659930.164
42DAP/41DAP1.308160.139
43DAP/42DAP3.506080.013
47DAP/43DAP1.314110.012
52DAP/47DAP0.696490.121
57DAP/52DAP0.516990.053
57DAP/7DAP1.085671

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.87040.122
17DAP/reference0.741660.024
27DAP/reference0.825760.071
39DAP/reference0.737750.023
41DAP/reference0.925820.326
42DAP/reference0.613550.01
43DAP/reference0.666850.012
47DAP/reference0.945140.504
52DAP/reference0.770040.035
57DAP/reference0.703370.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.022250.832
17DAP/reference1.51330.013
27DAP/reference1.673980.02
39DAP/reference1.297370.054
41DAP/reference1.386820.01
42DAP/reference1.33840.031
43DAP/reference1.440830.149
47DAP/reference1.645830.01
52DAP/reference1.380840.014
57DAP/reference1.296930.101

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.744870.035
17DAP/reference1.046031
27DAP/reference0.921940.195
39DAP/reference0.85750.069
41DAP/reference0.993260.618
42DAP/reference1.091680.45
43DAP/reference1.233570.452
47DAP/reference1.219240.171
52DAP/reference1.082520.664
57DAP/reference1.241820.462

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.149870.966
26DAP/20DAP1.112080.785
34DAP/26DAP0.931640.944
51DAP/34DAP1.285550.429
52DAP/51DAP1.089781
53DAP/52DAP1.221590.565
55DAP/53DAP1.050040.917
57DAP/55DAP0.943130.748
62DAP/57DAP0.94730.871
68DAP/62DAP1.08920.821
68DAP/14DAP0.700980.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.410610.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.437040.417
Mature Green Tomato/Ripe Tomato0.13470.017
Immature Eggplant/Mature Eggplant1.461150.05
Ripe Pepper/Ripe Tomato0.256340.293
Mature Eggplant/Ripe Tomato0.172331

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.091881
1-1-2/M821.174620.977
12-2/M821.568741
12-4/M821.899871
1-3/M822.228831
2-1-1/M821.356670.439
2-1/M820.657630.322
2-6/M820.905831
3-2/M821.727150.84
4-1-1/M821.551240.968
4-1/M820.56141N/A
4-3-2/M821.644080.253
4-3/M822.041220.268
5-3/M821.474070.496
6-2/M822.6151N/A
6-3/M821.568511
7-1/M820.831760.443
7-2/M821.74910.318
9-3-2/M822.05011

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.03012N/A
IL2-6/WTpooled0.979381
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.108261
IL12-4/WTpooled0.733770.461
IL1-4/WTpooled1.029741
WT/WTpooled1.018441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.745770.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.942941
DC3000/delta hrp 6h0.845040.95
DC3000/delta hrp 12h0.913581
DC3000/delta hrp 24h1.459270.063

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.179190.333
DC3000 delta B/DC3000 delta AB1.688970.089

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.865711
Exp 36h1.495150.489
Exp 60h1.435630.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.962321
Var 0h1.99010.782
Var 12h I row2-row11.078150.692
Var 12h NI row2-row10.949560.906
Var 36h I row2-row10.797090.805
Var 36h NI row2-row10.916710.743
Var 60h I row2-row10.956610.952
Var 60h NI row2-row11.013351
Time course 0hI-0hNI0.846750.101
Time course 12hI-12hNI0.819370.033
Time course 36hI-36hNI1.048340.718
Time course 60hI-60hNI1.822410.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.967320.26
transgenic ySAMdc/azygous control (breaker)2.737570.165
transgenic ySAMdc/azygous control (red)1.59330.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.002040.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.969590.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.568780.172
Manapal/WT (break)0.912371
Manapal/WT (red)0.363870.181