Expression of 1-1-5.4.12.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.73094 | 0.037 |
27DAP/17DAP | 0.5312 | 0.044 |
39DAP/27DAP | 1.3133 | 0.473 |
41DAP/39DAP | 1.0138 | 0.868 |
42DAP/41DAP | 2.03609 | 0.138 |
43DAP/42DAP | 1.84882 | 0.348 |
47DAP/43DAP | 0.95702 | 0.828 |
52DAP/47DAP | 0.51634 | 0.055 |
57DAP/52DAP | 0.99853 | 0.949 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.86773 | 0.075 |
17DAP/reference | 0.66104 | 0.091 |
27DAP/reference | 0.35348 | 0.011 |
39DAP/reference | 0.87811 | 0.261 |
41DAP/reference | 0.6319 | 0.021 |
42DAP/reference | 2.0764 | 0.002 |
43DAP/reference | 2.00189 | 0.008 |
47DAP/reference | 2.22336 | 0.002 |
52DAP/reference | 0.46866 | 0.02 |
57DAP/reference | 0.53395 | 0.028 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.33041 | 0.017 |
27DAP/17DAP | 0.9722 | 0.887 |
39DAP/27DAP | 0.80751 | 0.121 |
41DAP/39DAP | 1.09244 | 0.69 |
42DAP/41DAP | 1.28396 | 0.075 |
43DAP/42DAP | 1.67903 | 0.028 |
47DAP/43DAP | 1.33162 | 0.133 |
52DAP/47DAP | 1.42426 | 0.237 |
57DAP/52DAP | 0.68642 | 0.15 |
57DAP/7DAP | 0.43062 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28035 | 0.07 |
17DAP/reference | 1.17316 | 0.147 |
27DAP/reference | 1.04941 | 1 |
39DAP/reference | 1.02632 | 0.64 |
41DAP/reference | 1.68077 | 0.013 |
42DAP/reference | 1.20377 | 0.1 |
43DAP/reference | 1.37721 | 0.074 |
47DAP/reference | 1.02422 | 0.868 |
52DAP/reference | 0.75745 | 0.027 |
57DAP/reference | 0.7469 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42728 | 0.315 |
17DAP/reference | 1.96445 | 0.009 |
27DAP/reference | 1.18878 | 0.686 |
39DAP/reference | 0.72013 | 0.105 |
41DAP/reference | 2.93499 | 0.005 |
42DAP/reference | 0.88967 | 0.135 |
43DAP/reference | 0.89175 | 0.236 |
47DAP/reference | 1.57184 | 0.033 |
52DAP/reference | 0.71331 | 0.016 |
57DAP/reference | 0.82005 | 0.194 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0763 | 0.984 |
17DAP/reference | 1.16045 | 0.792 |
27DAP/reference | 0.81879 | 0.126 |
39DAP/reference | 0.98082 | 0.591 |
41DAP/reference | 0.95346 | 0.512 |
42DAP/reference | 2.25606 | 0.347 |
43DAP/reference | 3.16936 | 0.047 |
47DAP/reference | 3.37566 | 0.007 |
52DAP/reference | 1.71932 | 0.073 |
57DAP/reference | 1.12059 | 0.947 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.87727 | 1 |
26DAP/20DAP | 0.87817 | 0.512 |
34DAP/26DAP | 1.21078 | 1 |
51DAP/34DAP | 1.76444 | 0.511 |
52DAP/51DAP | 1.47964 | 0.035 |
53DAP/52DAP | 1.16431 | 0.753 |
55DAP/53DAP | 1.36747 | 0.046 |
57DAP/55DAP | 1.04974 | 0.975 |
62DAP/57DAP | 0.34358 | 0.016 |
68DAP/62DAP | 0.80151 | 0.464 |
68DAP/14DAP | 0.5856 | 0.056 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.02024 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.12119 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.88742 | 0.611 |
Immature Eggplant/Mature Eggplant | 0.44582 | 0.062 |
Ripe Pepper/Ripe Tomato | 0.19571 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.12103 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 3.27022 | 0.591 |
1-1-2/M82 | 2.48132 | 1 |
12-2/M82 | 0.98752 | 1 |
12-4/M82 | 3.69232 | 1 |
1-3/M82 | 2.55513 | 0.26 |
2-1-1/M82 | 0.83628 | 0.465 |
2-1/M82 | 1.00752 | 1 |
2-6/M82 | 1.06867 | 1 |
3-2/M82 | 1.08079 | 0.549 |
4-1-1/M82 | 1.17979 | 1 |
4-1/M82 | 6.3195 | 1 |
4-3-2/M82 | 1.40826 | 0.508 |
4-3/M82 | 0.94753 | 1 |
5-3/M82 | 0.94915 | 1 |
6-2/M82 | 1.76384 | 0.253 |
6-3/M82 | 0.87467 | 1 |
7-1/M82 | 0.88791 | 1 |
7-2/M82 | 0.54754 | 0.553 |
9-3-2/M82 | 2.3252 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75225 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.70981 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98594 | 1 |
DC3000/delta hrp 6h | 1.2603 | 1 |
DC3000/delta hrp 12h | 0.65722 | 1 |
DC3000/delta hrp 24h | 0.95723 | 0.782 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.65721 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.34398 | 0.133 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91217 | 1 |
Exp 36h | 0.61352 | 0.456 |
Exp 60h | 0.56369 | 0.32 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97784 | 1 |
Var 0h | 0.89793 | 1 |
Var 12h I row2-row1 | 0.77036 | 0.467 |
Var 12h NI row2-row1 | 0.94458 | 0.546 |
Var 36h I row2-row1 | 0.89402 | 1 |
Var 36h NI row2-row1 | 1.08873 | 1 |
Var 60h I row2-row1 | 0.84151 | 0.832 |
Var 60h NI row2-row1 | 1.00628 | 1 |
Time course 0hI-0hNI | 0.97731 | 0.906 |
Time course 12hI-12hNI | 0.94943 | 0.338 |
Time course 36hI-36hNI | 0.84678 | 0.041 |
Time course 60hI-60hNI | 0.47257 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8695 | 0.237 |
transgenic ySAMdc/azygous control (breaker) | 0.49714 | 0.139 |
transgenic ySAMdc/azygous control (red) | 1.01672 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.7974 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.22745 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84452 | 1 |
Manapal/WT (break) | 0.80954 | 0.333 |
Manapal/WT (red) | 0.45003 | 0.187 |
|
|