Expression of 1-1-5.4.12.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.730940.037
27DAP/17DAP0.53120.044
39DAP/27DAP1.31330.473
41DAP/39DAP1.01380.868
42DAP/41DAP2.036090.138
43DAP/42DAP1.848820.348
47DAP/43DAP0.957020.828
52DAP/47DAP0.516340.055
57DAP/52DAP0.998530.949

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.867730.075
17DAP/reference0.661040.091
27DAP/reference0.353480.011
39DAP/reference0.878110.261
41DAP/reference0.63190.021
42DAP/reference2.07640.002
43DAP/reference2.001890.008
47DAP/reference2.223360.002
52DAP/reference0.468660.02
57DAP/reference0.533950.028

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.330410.017
27DAP/17DAP0.97220.887
39DAP/27DAP0.807510.121
41DAP/39DAP1.092440.69
42DAP/41DAP1.283960.075
43DAP/42DAP1.679030.028
47DAP/43DAP1.331620.133
52DAP/47DAP1.424260.237
57DAP/52DAP0.686420.15
57DAP/7DAP0.430621

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.280350.07
17DAP/reference1.173160.147
27DAP/reference1.049411
39DAP/reference1.026320.64
41DAP/reference1.680770.013
42DAP/reference1.203770.1
43DAP/reference1.377210.074
47DAP/reference1.024220.868
52DAP/reference0.757450.027
57DAP/reference0.74690.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.427280.315
17DAP/reference1.964450.009
27DAP/reference1.188780.686
39DAP/reference0.720130.105
41DAP/reference2.934990.005
42DAP/reference0.889670.135
43DAP/reference0.891750.236
47DAP/reference1.571840.033
52DAP/reference0.713310.016
57DAP/reference0.820050.194

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.07630.984
17DAP/reference1.160450.792
27DAP/reference0.818790.126
39DAP/reference0.980820.591
41DAP/reference0.953460.512
42DAP/reference2.256060.347
43DAP/reference3.169360.047
47DAP/reference3.375660.007
52DAP/reference1.719320.073
57DAP/reference1.120590.947

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.877271
26DAP/20DAP0.878170.512
34DAP/26DAP1.210781
51DAP/34DAP1.764440.511
52DAP/51DAP1.479640.035
53DAP/52DAP1.164310.753
55DAP/53DAP1.367470.046
57DAP/55DAP1.049740.975
62DAP/57DAP0.343580.016
68DAP/62DAP0.801510.464
68DAP/14DAP0.58560.056

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.020240.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.121190.058
Mature Green Tomato/Ripe Tomato0.887420.611
Immature Eggplant/Mature Eggplant0.445820.062
Ripe Pepper/Ripe Tomato0.195710.224
Mature Eggplant/Ripe Tomato0.121030.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M823.270220.591
1-1-2/M822.481321
12-2/M820.987521
12-4/M823.692321
1-3/M822.555130.26
2-1-1/M820.836280.465
2-1/M821.007521
2-6/M821.068671
3-2/M821.080790.549
4-1-1/M821.179791
4-1/M826.31951
4-3-2/M821.408260.508
4-3/M820.947531
5-3/M820.949151
6-2/M821.763840.253
6-3/M820.874671
7-1/M820.887911
7-2/M820.547540.553
9-3-2/M822.32521

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.75225
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.709810.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.985941
DC3000/delta hrp 6h1.26031
DC3000/delta hrp 12h0.657221
DC3000/delta hrp 24h0.957230.782

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.657210.042
DC3000 delta B/DC3000 delta AB1.343980.133

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.912171
Exp 36h0.613520.456
Exp 60h0.563690.32

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977841
Var 0h0.897931
Var 12h I row2-row10.770360.467
Var 12h NI row2-row10.944580.546
Var 36h I row2-row10.894021
Var 36h NI row2-row11.088731
Var 60h I row2-row10.841510.832
Var 60h NI row2-row11.006281
Time course 0hI-0hNI0.977310.906
Time course 12hI-12hNI0.949430.338
Time course 36hI-36hNI0.846780.041
Time course 60hI-60hNI0.472570.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.86950.237
transgenic ySAMdc/azygous control (breaker)0.497140.139
transgenic ySAMdc/azygous control (red)1.016721

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.79740.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.227450.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.844521
Manapal/WT (break)0.809540.333
Manapal/WT (red)0.450030.187