Expression of 1-1-5.4.13.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97222 | 0.788 |
27DAP/17DAP | 1.17281 | 0.833 |
39DAP/27DAP | 1.06029 | 0.99 |
41DAP/39DAP | 1.24737 | 0.597 |
42DAP/41DAP | 1.14128 | 0.777 |
43DAP/42DAP | 1.07022 | 1 |
47DAP/43DAP | 1.01476 | 1 |
52DAP/47DAP | 1.30742 | 0.446 |
57DAP/52DAP | 1.00793 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97331 | 0.412 |
17DAP/reference | 0.97772 | 0.474 |
27DAP/reference | 0.98486 | 0.595 |
39DAP/reference | 0.93048 | 0.487 |
41DAP/reference | 0.9565 | 0.201 |
42DAP/reference | 0.93001 | 0.006 |
43DAP/reference | 0.99379 | 0.84 |
47DAP/reference | 0.96843 | 0.191 |
52DAP/reference | 0.89675 | 0.147 |
57DAP/reference | 0.92272 | 0.106 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95694 | 0.484 |
27DAP/17DAP | 1.02948 | 0.909 |
39DAP/27DAP | 1.0386 | 0.646 |
41DAP/39DAP | 0.99656 | 1 |
42DAP/41DAP | 0.99193 | 0.869 |
43DAP/42DAP | 0.99053 | 0.928 |
47DAP/43DAP | 0.98303 | 0.877 |
52DAP/47DAP | 1.01972 | 0.919 |
57DAP/52DAP | 1.04278 | 0.753 |
57DAP/7DAP | 1.03305 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05122 | 0.91 |
17DAP/reference | 0.89046 | 0.108 |
27DAP/reference | 0.91734 | 0.135 |
39DAP/reference | 1.07083 | 0.705 |
41DAP/reference | 0.97052 | 0.469 |
42DAP/reference | 0.9964 | 0.675 |
43DAP/reference | 0.95714 | 0.241 |
47DAP/reference | 0.99781 | 1 |
52DAP/reference | 0.85117 | 0.035 |
57DAP/reference | 0.87834 | 0.101 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03039 | 0.832 |
17DAP/reference | 1.03291 | 0.806 |
27DAP/reference | 0.99842 | 0.735 |
39DAP/reference | 0.92847 | 0.095 |
41DAP/reference | 0.93659 | 0.115 |
42DAP/reference | 0.93558 | 0.055 |
43DAP/reference | 1.10028 | 0.268 |
47DAP/reference | 0.92969 | 0.042 |
52DAP/reference | 0.96031 | 0.156 |
57DAP/reference | 1.08882 | 0.269 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96547 | 0.566 |
17DAP/reference | 0.98504 | 0.681 |
27DAP/reference | 0.91175 | 0.357 |
39DAP/reference | 0.9723 | 0.464 |
41DAP/reference | 0.93934 | 0.107 |
42DAP/reference | 0.87143 | 0.071 |
43DAP/reference | 0.99233 | 0.66 |
47DAP/reference | 0.9988 | 0.708 |
52DAP/reference | 1.24922 | 1 |
57DAP/reference | 0.78585 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99853 | 1 |
26DAP/20DAP | 1.00883 | 1 |
34DAP/26DAP | 0.99585 | 1 |
51DAP/34DAP | 1.0305 | 0.795 |
52DAP/51DAP | 1.00061 | 1 |
53DAP/52DAP | 0.98332 | 0.917 |
55DAP/53DAP | 0.99246 | 0.886 |
57DAP/55DAP | 1.055 | 0.881 |
62DAP/57DAP | 1.01077 | 1 |
68DAP/62DAP | 0.8249 | 0.406 |
68DAP/14DAP | 1.04299 | 0.785 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96655 | 0.493 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.80397 | 0.26 |
Mature Green Tomato/Ripe Tomato | 0.93505 | 0.487 |
Immature Eggplant/Mature Eggplant | 1.19987 | 0.058 |
Ripe Pepper/Ripe Tomato | 2.7316 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.51978 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09378 | 0.877 |
1-1-2/M82 | 1.04165 | 1 |
12-2/M82 | 1.08009 | 1 |
12-4/M82 | 1.03128 | 1 |
1-3/M82 | 1.07371 | 0.26 |
2-1-1/M82 | 1.1676 | 0.249 |
2-1/M82 | 1.23648 | |
2-6/M82 | 0.95853 | 1 |
3-2/M82 | 0.93881 | 0.752 |
4-1-1/M82 | 0.98537 | 1 |
4-1/M82 | 1.12747 | 0.853 |
4-3-2/M82 | 0.95903 | 1 |
4-3/M82 | 1.0047 | 1 |
5-3/M82 | 1.01327 | 1 |
6-2/M82 | 0.92735 | |
6-3/M82 | 1.10251 | 1 |
7-1/M82 | 1.11574 | 1 |
7-2/M82 | 1.08653 | 0.385 |
9-3-2/M82 | 0.94351 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.89216 | 0.243 |
IL2-6/WTpooled | 1.02967 | 1 |
IL7-5/WTpooled | 5.73077 | 0.792 |
IL7-3/WTpooled | 0.90331 | 0.293 |
IL12-4/WTpooled | 1.07059 | 0.522 |
IL1-4/WTpooled | 0.96242 | 0.834 |
WT/WTpooled | 0.91487 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09391 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02236 | 0.921 |
DC3000/delta hrp 6h | 0.86553 | 0.95 |
DC3000/delta hrp 12h | 1.06197 | 1 |
DC3000/delta hrp 24h | 1.0624 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.2157 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.0851 | 0.423 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08508 | 1 |
Exp 36h | 1.25519 | 0.693 |
Exp 60h | 1.28008 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00075 | 1 |
Var 0h | 0.87754 | 0.933 |
Var 12h I row2-row1 | 1.15047 | 0.58 |
Var 12h NI row2-row1 | 0.95841 | 0.627 |
Var 36h I row2-row1 | 1.04989 | 1 |
Var 36h NI row2-row1 | 1.24729 | 1 |
Var 60h I row2-row1 | 1.05212 | 0.562 |
Var 60h NI row2-row1 | 1.05929 | 1 |
Time course 0hI-0hNI | 1.09005 | 0.719 |
Time course 12hI-12hNI | 1.05143 | 0.714 |
Time course 36hI-36hNI | 1.07839 | 0.019 |
Time course 60hI-60hNI | 1.72929 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97674 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 0.91065 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.92726 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01845 | 0.273 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81663 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84467 | 1 |
Manapal/WT (break) | 0.9149 | 1 |
Manapal/WT (red) | 1.26666 | 0.142 |
|
|