Expression of 1-1-5.4.13.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.972220.788
27DAP/17DAP1.172810.833
39DAP/27DAP1.060290.99
41DAP/39DAP1.247370.597
42DAP/41DAP1.141280.777
43DAP/42DAP1.070221
47DAP/43DAP1.014761
52DAP/47DAP1.307420.446
57DAP/52DAP1.007930.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.973310.412
17DAP/reference0.977720.474
27DAP/reference0.984860.595
39DAP/reference0.930480.487
41DAP/reference0.95650.201
42DAP/reference0.930010.006
43DAP/reference0.993790.84
47DAP/reference0.968430.191
52DAP/reference0.896750.147
57DAP/reference0.922720.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.956940.484
27DAP/17DAP1.029480.909
39DAP/27DAP1.03860.646
41DAP/39DAP0.996561
42DAP/41DAP0.991930.869
43DAP/42DAP0.990530.928
47DAP/43DAP0.983030.877
52DAP/47DAP1.019720.919
57DAP/52DAP1.042780.753
57DAP/7DAP1.033051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.051220.91
17DAP/reference0.890460.108
27DAP/reference0.917340.135
39DAP/reference1.070830.705
41DAP/reference0.970520.469
42DAP/reference0.99640.675
43DAP/reference0.957140.241
47DAP/reference0.997811
52DAP/reference0.851170.035
57DAP/reference0.878340.101

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.030390.832
17DAP/reference1.032910.806
27DAP/reference0.998420.735
39DAP/reference0.928470.095
41DAP/reference0.936590.115
42DAP/reference0.935580.055
43DAP/reference1.100280.268
47DAP/reference0.929690.042
52DAP/reference0.960310.156
57DAP/reference1.088820.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965470.566
17DAP/reference0.985040.681
27DAP/reference0.911750.357
39DAP/reference0.97230.464
41DAP/reference0.939340.107
42DAP/reference0.871430.071
43DAP/reference0.992330.66
47DAP/reference0.99880.708
52DAP/reference1.249221
57DAP/reference0.785850.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.998531
26DAP/20DAP1.008831
34DAP/26DAP0.995851
51DAP/34DAP1.03050.795
52DAP/51DAP1.000611
53DAP/52DAP0.983320.917
55DAP/53DAP0.992460.886
57DAP/55DAP1.0550.881
62DAP/57DAP1.010771
68DAP/62DAP0.82490.406
68DAP/14DAP1.042990.785

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.966550.493

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.803970.26
Mature Green Tomato/Ripe Tomato0.935050.487
Immature Eggplant/Mature Eggplant1.199870.058
Ripe Pepper/Ripe Tomato2.73160.258
Mature Eggplant/Ripe Tomato1.519780.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.093780.877
1-1-2/M821.041651
12-2/M821.080091
12-4/M821.031281
1-3/M821.073710.26
2-1-1/M821.16760.249
2-1/M821.23648
2-6/M820.958531
3-2/M820.938810.752
4-1-1/M820.985371
4-1/M821.127470.853
4-3-2/M820.959031
4-3/M821.00471
5-3/M821.013271
6-2/M820.92735
6-3/M821.102511
7-1/M821.115741
7-2/M821.086530.385
9-3-2/M820.943510.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.892160.243
IL2-6/WTpooled1.029671
IL7-5/WTpooled5.730770.792
IL7-3/WTpooled0.903310.293
IL12-4/WTpooled1.070590.522
IL1-4/WTpooled0.962420.834
WT/WTpooled0.914871

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.093910.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.022360.921
DC3000/delta hrp 6h0.865530.95
DC3000/delta hrp 12h1.061971
DC3000/delta hrp 24h1.06240.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.21570.042
DC3000 delta B/DC3000 delta AB1.08510.423

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.085081
Exp 36h1.255190.693
Exp 60h1.280080.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000751
Var 0h0.877540.933
Var 12h I row2-row11.150470.58
Var 12h NI row2-row10.958410.627
Var 36h I row2-row11.049891
Var 36h NI row2-row11.247291
Var 60h I row2-row11.052120.562
Var 60h NI row2-row11.059291
Time course 0hI-0hNI1.090050.719
Time course 12hI-12hNI1.051430.714
Time course 36hI-36hNI1.078390.019
Time course 60hI-60hNI1.729290.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.976740.428
transgenic ySAMdc/azygous control (breaker)0.910650.251
transgenic ySAMdc/azygous control (red)0.927261

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.018450.273

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.816630.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.844671
Manapal/WT (break)0.91491
Manapal/WT (red)1.266660.142