Expression of 1-1-5.4.13.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.995560.911
27DAP/17DAP1.228220.849
39DAP/27DAP0.904230.544
41DAP/39DAP1.021780.844
42DAP/41DAP1.201960.752
43DAP/42DAP1.004020.937
47DAP/43DAP1.113770.49
52DAP/47DAP1.14760.786
57DAP/52DAP1.099090.427

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.018480.872
17DAP/reference0.997110.957
27DAP/reference1.001381
39DAP/reference0.983110.762
41DAP/reference1.029690.393
42DAP/reference0.977520.196
43DAP/reference1.001331
47DAP/reference1.001011
52DAP/reference0.993390.654
57DAP/reference1.045970.511

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.120630.525
27DAP/17DAP1.026930.9
39DAP/27DAP1.003210.862
41DAP/39DAP1.065730.347
42DAP/41DAP0.984620.809
43DAP/42DAP0.994310.96
47DAP/43DAP0.946780.701
52DAP/47DAP0.961430.763
57DAP/52DAP0.983610.776
57DAP/7DAP1.057661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02570.876
17DAP/reference1.126550.162
27DAP/reference1.05370.246
39DAP/reference1.160140.021
41DAP/reference1.180470.121
42DAP/reference1.215840.006
43DAP/reference1.37780.013
47DAP/reference1.100350.36
52DAP/reference1.313560.011
57DAP/reference1.274330.066

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.936040.14
17DAP/reference1.012840.979
27DAP/reference0.962360.257
39DAP/reference0.951960.147
41DAP/reference0.998220.649
42DAP/reference1.028740.68
43DAP/reference1.007160.997
47DAP/reference0.97110.05
52DAP/reference0.948770.029
57DAP/reference0.968810.144

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.060970.366
17DAP/reference0.954710.342
27DAP/reference1.189840.188
39DAP/reference1.162390.022
41DAP/reference1.084550.397
42DAP/reference1.170490.294
43DAP/reference1.008640.894
47DAP/reference1.016090.901
52DAP/reference1.12290.318
57DAP/reference0.953520.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.953551
26DAP/20DAP0.982421
34DAP/26DAP1.038630.819
51DAP/34DAP0.982180.791
52DAP/51DAP0.989081
53DAP/52DAP1.062070.623
55DAP/53DAP0.993910.894
57DAP/55DAP1.000680.97
62DAP/57DAP0.955360.681
68DAP/62DAP1.016320.95
68DAP/14DAP1.053690.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.979370.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.847350.458
Mature Green Tomato/Ripe Tomato0.682590.06
Immature Eggplant/Mature Eggplant0.929720.808
Ripe Pepper/Ripe Tomato0.537710.224
Mature Eggplant/Ripe Tomato0.53130.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.07830.742
1-1-2/M821.051181
12-2/M821.049731
12-4/M820.962971
1-3/M820.9680.501
2-1-1/M821.120060.764
2-1/M821.32813
2-6/M820.917391
3-2/M821.012150.967
4-1-1/M820.86789
4-1/M821.223480.444
4-3-2/M820.815650.487
4-3/M821.131391
5-3/M821.034190.572
6-2/M821.05115
6-3/M820.937110.982
7-1/M820.951651
7-2/M821.040171
9-3-2/M820.81830.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.450970.321
IL2-6/WTpooled1.453420.395
IL7-5/WTpooled0.928341
IL7-3/WTpooled0.915760.418
IL12-4/WTpooled0.902880.71
IL1-4/WTpooled1.079431
WT/WTpooled1.011721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.98321

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.009951
DC3000/delta hrp 6h1.015560.95
DC3000/delta hrp 12h1.00191
DC3000/delta hrp 24h1.031920.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.145460.042
DC3000 delta B/DC3000 delta AB1.140750.217

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.085351
Exp 36h0.991911
Exp 60h1.141720.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.015721
Var 0h1.08940.325
Var 12h I row2-row11.157050.242
Var 12h NI row2-row10.916950.627
Var 36h I row2-row11.005021
Var 36h NI row2-row10.870310.584
Var 60h I row2-row11.110531
Var 60h NI row2-row11.085661
Time course 0hI-0hNI1.05810.867
Time course 12hI-12hNI1.02820.811
Time course 36hI-36hNI0.956160.45
Time course 60hI-60hNI1.454190.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.079980.455
transgenic ySAMdc/azygous control (breaker)1.643310.166
transgenic ySAMdc/azygous control (red)1.626780.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.019160.448

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.017261

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.00321
Manapal/WT (break)0.852511
Manapal/WT (red)1.030641