Expression of 1-1-5.4.13.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2254 | 0.428 |
27DAP/17DAP | 1.2988 | 0.646 |
39DAP/27DAP | 0.97892 | 0.749 |
41DAP/39DAP | 0.95342 | 0.839 |
42DAP/41DAP | 1.43265 | 0.647 |
43DAP/42DAP | 0.85067 | 0.783 |
47DAP/43DAP | 1.36627 | 0.285 |
52DAP/47DAP | 0.83552 | 0.559 |
57DAP/52DAP | 1.52076 | 0.652 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04643 | 0.788 |
17DAP/reference | 1.13615 | 0.117 |
27DAP/reference | 1.07913 | 0.211 |
39DAP/reference | 1.193 | 0.229 |
41DAP/reference | 1.09263 | 0.48 |
42DAP/reference | 0.96016 | 0.268 |
43DAP/reference | 0.96632 | 0.594 |
47DAP/reference | 0.95683 | 0.191 |
52DAP/reference | 1.05352 | 0.766 |
57DAP/reference | 0.99224 | 0.671 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22959 | 0.29 |
27DAP/17DAP | 1.07841 | 0.969 |
39DAP/27DAP | 1.21674 | 0.292 |
41DAP/39DAP | 1.20583 | 0.719 |
42DAP/41DAP | 0.99736 | 0.872 |
43DAP/42DAP | 0.92743 | 0.431 |
47DAP/43DAP | 1.14305 | 0.708 |
52DAP/47DAP | 1.05739 | 0.816 |
57DAP/52DAP | 1.10317 | 0.925 |
57DAP/7DAP | 1.16063 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06451 | 0.545 |
17DAP/reference | 1.05671 | 1 |
27DAP/reference | 0.87402 | 0.01 |
39DAP/reference | 1.16383 | 0.391 |
41DAP/reference | 1.06481 | 0.812 |
42DAP/reference | 1.42151 | 0.037 |
43DAP/reference | 1.50204 | 0.012 |
47DAP/reference | 1.0539 | 1 |
52DAP/reference | 1.07322 | 0.599 |
57DAP/reference | 1.04449 | 0.698 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1291 | 0.495 |
17DAP/reference | 1.07357 | 0.338 |
27DAP/reference | 1.00744 | 1 |
39DAP/reference | 0.93843 | 0.289 |
41DAP/reference | 0.93088 | 0.299 |
42DAP/reference | 0.90372 | 0.121 |
43DAP/reference | 1.1139 | 0.617 |
47DAP/reference | 0.97101 | 0.4 |
52DAP/reference | 0.9588 | 0.327 |
57DAP/reference | 1.10076 | 0.314 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09512 | 0.265 |
17DAP/reference | 1.02941 | 0.784 |
27DAP/reference | 1.04366 | 0.373 |
39DAP/reference | 1.08708 | 0.042 |
41DAP/reference | 1.00194 | 0.826 |
42DAP/reference | 1.16074 | 0.459 |
43DAP/reference | 1.03217 | 0.827 |
47DAP/reference | 1.04794 | 0.994 |
52DAP/reference | 1.36558 | 0.146 |
57DAP/reference | 0.92876 | 0.293 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.58881 | 0.966 |
26DAP/20DAP | 1.54518 | 0.21 |
34DAP/26DAP | 0.87419 | 0.404 |
51DAP/34DAP | 1.10246 | |
52DAP/51DAP | 1.08208 | 0.776 |
53DAP/52DAP | 1.08674 | 0.91 |
55DAP/53DAP | 0.87812 | 0.363 |
57DAP/55DAP | 0.97722 | 0.789 |
62DAP/57DAP | 0.92312 | 0.466 |
68DAP/62DAP | 0.93874 | 0.769 |
68DAP/14DAP | 0.81629 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.25629 | 0.077 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.76019 | |
Mature Green Tomato/Ripe Tomato | 1.16699 | 0.752 |
Immature Eggplant/Mature Eggplant | 1.59388 | 0.052 |
Ripe Pepper/Ripe Tomato | 0.26357 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.30165 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.567 | 0.673 |
1-1-2/M82 | 0.84469 | 1 |
12-2/M82 | 1.55898 | 1 |
12-4/M82 | 0.69107 | 0.619 |
1-3/M82 | 0.89119 | 1 |
2-1-1/M82 | 0.57494 | 0.683 |
2-1/M82 | 0.71619 | 0.519 |
2-6/M82 | 0.32413 | 0.501 |
3-2/M82 | 0.5874 | 0.752 |
4-1-1/M82 | 0.17823 | |
4-1/M82 | 0.59944 | |
4-3-2/M82 | 0.25162 | 0.487 |
4-3/M82 | 0.24438 | 0.46 |
5-3/M82 | 1.05821 | 1 |
6-2/M82 | 0.20395 | |
6-3/M82 | 1.03105 | 1 |
7-1/M82 | 0.96732 | 1 |
7-2/M82 | 0.46941 | 0.57 |
9-3-2/M82 | 0.37738 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.99474 | 1 |
IL2-6/WTpooled | 0.86536 | 1 |
IL7-5/WTpooled | 1.05638 | 1 |
IL7-3/WTpooled | 1.14656 | 1 |
IL12-4/WTpooled | 1.00857 | 1 |
IL1-4/WTpooled | 1.10884 | 1 |
WT/WTpooled | 1.01413 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.20433 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98293 | 1 |
DC3000/delta hrp 6h | 0.96658 | 0.95 |
DC3000/delta hrp 12h | 1.11051 | 1 |
DC3000/delta hrp 24h | 0.79744 | 0.071 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0178 | 1 |
Exp 36h | 1.94228 | 0.349 |
Exp 60h | 1.03353 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0639 | 1 |
Var 0h | 0.78673 | 0.457 |
Var 12h I row2-row1 | 1.2338 | 0.406 |
Var 12h NI row2-row1 | 5.73153 | 1 |
Var 36h I row2-row1 | 1.0725 | 1 |
Var 36h NI row2-row1 | 1.05431 | 1 |
Var 60h I row2-row1 | 0.83353 | 0.832 |
Var 60h NI row2-row1 | 0.6264 | 0.932 |
Time course 0hI-0hNI | 0.94637 | 0.709 |
Time course 12hI-12hNI | 1.06081 | 0.687 |
Time course 36hI-36hNI | 0.98942 | 0.68 |
Time course 60hI-60hNI | 2.95572 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.455 | 0.245 |
transgenic ySAMdc/azygous control (breaker) | 1.01764 | 1 |
transgenic ySAMdc/azygous control (red) | 0.6944 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.09879 | 0.083 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.80382 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93913 | 1 |
Manapal/WT (break) | 1.20877 | 1 |
Manapal/WT (red) | 0.87816 | 0.181 |
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