Expression of 1-1-5.4.13.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.22540.428
27DAP/17DAP1.29880.646
39DAP/27DAP0.978920.749
41DAP/39DAP0.953420.839
42DAP/41DAP1.432650.647
43DAP/42DAP0.850670.783
47DAP/43DAP1.366270.285
52DAP/47DAP0.835520.559
57DAP/52DAP1.520760.652

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.046430.788
17DAP/reference1.136150.117
27DAP/reference1.079130.211
39DAP/reference1.1930.229
41DAP/reference1.092630.48
42DAP/reference0.960160.268
43DAP/reference0.966320.594
47DAP/reference0.956830.191
52DAP/reference1.053520.766
57DAP/reference0.992240.671

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.229590.29
27DAP/17DAP1.078410.969
39DAP/27DAP1.216740.292
41DAP/39DAP1.205830.719
42DAP/41DAP0.997360.872
43DAP/42DAP0.927430.431
47DAP/43DAP1.143050.708
52DAP/47DAP1.057390.816
57DAP/52DAP1.103170.925
57DAP/7DAP1.160630.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.064510.545
17DAP/reference1.056711
27DAP/reference0.874020.01
39DAP/reference1.163830.391
41DAP/reference1.064810.812
42DAP/reference1.421510.037
43DAP/reference1.502040.012
47DAP/reference1.05391
52DAP/reference1.073220.599
57DAP/reference1.044490.698

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.12910.495
17DAP/reference1.073570.338
27DAP/reference1.007441
39DAP/reference0.938430.289
41DAP/reference0.930880.299
42DAP/reference0.903720.121
43DAP/reference1.11390.617
47DAP/reference0.971010.4
52DAP/reference0.95880.327
57DAP/reference1.100760.314

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.095120.265
17DAP/reference1.029410.784
27DAP/reference1.043660.373
39DAP/reference1.087080.042
41DAP/reference1.001940.826
42DAP/reference1.160740.459
43DAP/reference1.032170.827
47DAP/reference1.047940.994
52DAP/reference1.365580.146
57DAP/reference0.928760.293

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.588810.966
26DAP/20DAP1.545180.21
34DAP/26DAP0.874190.404
51DAP/34DAP1.10246
52DAP/51DAP1.082080.776
53DAP/52DAP1.086740.91
55DAP/53DAP0.878120.363
57DAP/55DAP0.977220.789
62DAP/57DAP0.923120.466
68DAP/62DAP0.938740.769
68DAP/14DAP0.816291

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.256290.077

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.76019
Mature Green Tomato/Ripe Tomato1.166990.752
Immature Eggplant/Mature Eggplant1.593880.052
Ripe Pepper/Ripe Tomato0.263570.224
Mature Eggplant/Ripe Tomato0.301651

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.5670.673
1-1-2/M820.844691
12-2/M821.558981
12-4/M820.691070.619
1-3/M820.891191
2-1-1/M820.574940.683
2-1/M820.716190.519
2-6/M820.324130.501
3-2/M820.58740.752
4-1-1/M820.17823
4-1/M820.59944
4-3-2/M820.251620.487
4-3/M820.244380.46
5-3/M821.058211
6-2/M820.20395
6-3/M821.031051
7-1/M820.967321
7-2/M820.469410.57
9-3-2/M820.377380.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.994741
IL2-6/WTpooled0.865361
IL7-5/WTpooled1.056381
IL7-3/WTpooled1.146561
IL12-4/WTpooled1.008571
IL1-4/WTpooled1.108841
WT/WTpooled1.014131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.204331

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.982931
DC3000/delta hrp 6h0.966580.95
DC3000/delta hrp 12h1.110511
DC3000/delta hrp 24h0.797440.071

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.01781
Exp 36h1.942280.349
Exp 60h1.033531

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.06391
Var 0h0.786730.457
Var 12h I row2-row11.23380.406
Var 12h NI row2-row15.731531
Var 36h I row2-row11.07251
Var 36h NI row2-row11.054311
Var 60h I row2-row10.833530.832
Var 60h NI row2-row10.62640.932
Time course 0hI-0hNI0.946370.709
Time course 12hI-12hNI1.060810.687
Time course 36hI-36hNI0.989420.68
Time course 60hI-60hNI2.955720.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.4550.245
transgenic ySAMdc/azygous control (breaker)1.017641
transgenic ySAMdc/azygous control (red)0.69441

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.098790.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.803820.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.939131
Manapal/WT (break)1.208771
Manapal/WT (red)0.878160.181