Expression of 1-1-5.4.13.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.746120.085
27DAP/17DAP0.899450.783
39DAP/27DAP1.519730.395
41DAP/39DAP0.760690.184
42DAP/41DAP1.467620.66
43DAP/42DAP0.979680.925
47DAP/43DAP0.932370.754
52DAP/47DAP1.077330.926
57DAP/52DAP1.06660.972

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.36570.018
17DAP/reference1.031280.813
27DAP/reference0.969850.61
39DAP/reference1.1930.628
41DAP/reference1.04670.759
42DAP/reference1.156370.007
43DAP/reference1.14540.044
47DAP/reference1.216340.006
52DAP/reference1.026580.991
57DAP/reference1.139810.094

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.963310.629
27DAP/17DAP0.959890.724
39DAP/27DAP0.914830.227
41DAP/39DAP1.094630.883
42DAP/41DAP1.024161
43DAP/42DAP0.784650.023
47DAP/43DAP1.112640.369
52DAP/47DAP0.8880.271
57DAP/52DAP0.968310.66
57DAP/7DAP0.712060.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.045291
17DAP/reference0.934560.338
27DAP/referenceN/AN/A
39DAP/reference0.96160.056
41DAP/reference1.056720.325
42DAP/reference0.956130.06
43DAP/reference0.899930.105
47DAP/reference1.198810.161
52DAP/reference0.966650.254
57DAP/reference0.914520.176

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.304160.081
17DAP/reference1.30760.022
27DAP/reference1.426410.022
39DAP/reference1.217110.082
41DAP/reference1.063640.48
42DAP/reference1.260930.011
43DAP/reference1.20340.182
47DAP/reference1.482870.01
52DAP/reference0.99810.619
57DAP/reference0.953310.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.05689
17DAP/reference1.066370.706
27DAP/reference1.038880.721
39DAP/reference0.956240.43
41DAP/reference0.973150.512
42DAP/reference1.152630.364
43DAP/reference1.138170.331
47DAP/reference1.204540.171
52DAP/reference1.254460.483
57DAP/reference1.503670.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.121120.966
26DAP/20DAP2.32640.097
34DAP/26DAP0.890490.682
51DAP/34DAP0.971970.816
52DAP/51DAP0.942621
53DAP/52DAP1.005460.998
55DAP/53DAP0.624520.018
57DAP/55DAP1.340870.214
62DAP/57DAP1.045210.902
68DAP/62DAP1.08780.878
68DAP/14DAP0.921221

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.584350.027

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.814720.268
Mature Green Tomato/Ripe Tomato1.320660.106
Immature Eggplant/Mature Eggplant1.2490.053
Ripe Pepper/Ripe Tomato1.188570.258
Mature Eggplant/Ripe Tomato1.410680.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.87520.944
1-1-2/M821.051631
12-2/M820.900150.692
12-4/M820.945761
1-3/M822.045460.277
2-1-1/M821.233010.343
2-1/M821.045861
2-6/M820.93131
3-2/M821.254640.463
4-1-1/M821.097311
4-1/M821.165721
4-3-2/M821.318150.508
4-3/M821.473631
5-3/M821.367060.572
6-2/M820.85309
6-3/M820.985521
7-1/M820.928450.803
7-2/M821.26651
9-3-2/M821.28511

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.909011
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.236150.362
IL12-4/WTpooled1.028590.891
IL1-4/WTpooled0.98801
WT/WTpooled0.993451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.076161

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.142320.692
DC3000/delta hrp 6h1.09010.978
DC3000/delta hrp 12h0.929011
DC3000/delta hrp 24h1.033840.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.204910.042
DC3000 delta B/DC3000 delta AB1.382870.142

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.919121
Exp 36h1.365431
Exp 60h1.24761

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.012871
Var 0h0.995871
Var 12h I row2-row11.010911
Var 12h NI row2-row11.195141
Var 36h I row2-row11.17940.908
Var 36h NI row2-row10.849620.584
Var 60h I row2-row10.888640.832
Var 60h NI row2-row10.743890.292
Time course 0hI-0hNI0.882850.189
Time course 12hI-12hNI1.113410.046
Time course 36hI-36hNI1.388320.063
Time course 60hI-60hNI1.944630.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.957380.454
transgenic ySAMdc/azygous control (breaker)1.199631
transgenic ySAMdc/azygous control (red)1.203120.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.150190.08

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.632380.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.914031
Manapal/WT (break)1.16440.381
Manapal/WT (red)1.195680.164