Expression of 1-1-5.4.14.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.75993 | 0.114 |
27DAP/17DAP | 0.86477 | 0.589 |
39DAP/27DAP | 0.88461 | 0.583 |
41DAP/39DAP | 0.99185 | 0.925 |
42DAP/41DAP | 1.07466 | 1 |
43DAP/42DAP | 1.13548 | 1 |
47DAP/43DAP | 1.24702 | 0.633 |
52DAP/47DAP | 0.97603 | 0.799 |
57DAP/52DAP | 1.16904 | 0.963 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29021 | 0.02 |
17DAP/reference | 1.14412 | 0.089 |
27DAP/reference | 1.04444 | 0.339 |
39DAP/reference | 1.1002 | 0.413 |
41DAP/reference | 1.34993 | 0.014 |
42DAP/reference | 1.41157 | 0.001 |
43DAP/reference | 1.02393 | 0.928 |
47DAP/reference | 1.26907 | 0.002 |
52DAP/reference | 1.30471 | 0.017 |
57DAP/reference | 1.32002 | 0.28 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.75743 | 0.085 |
27DAP/17DAP | 0.95184 | 0.821 |
39DAP/27DAP | 0.71711 | 0.068 |
41DAP/39DAP | 0.54258 | 0.034 |
42DAP/41DAP | 1.00711 | 0.899 |
43DAP/42DAP | 1.37266 | 0.021 |
47DAP/43DAP | 0.84485 | 0.042 |
52DAP/47DAP | 0.89473 | 0.24 |
57DAP/52DAP | 0.96281 | 0.716 |
57DAP/7DAP | 0.6278 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99205 | 0.682 |
17DAP/reference | 0.85041 | 0.082 |
27DAP/reference | 0.85235 | 0.082 |
39DAP/reference | 0.88505 | 0.034 |
41DAP/reference | 0.93675 | 0.311 |
42DAP/reference | 0.86513 | 0.189 |
43DAP/reference | 0.99525 | 0.637 |
47DAP/reference | 1.08226 | 0.67 |
52DAP/reference | 1.00904 | 0.802 |
57DAP/reference | 1.10265 | 0.468 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41625 | 0.072 |
17DAP/reference | 1.83833 | 0.009 |
27DAP/reference | 1.46672 | 0.026 |
39DAP/reference | 1.67744 | 0.011 |
41DAP/reference | 1.51077 | 0.006 |
42DAP/reference | 1.64253 | 0.008 |
43DAP/reference | 1.32326 | 0.485 |
47DAP/reference | 1.47925 | 0.008 |
52DAP/reference | 1.70078 | 0.006 |
57DAP/reference | 1.72116 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84168 | 0.087 |
17DAP/reference | 1.06513 | 0.814 |
27DAP/reference | 1.02959 | 0.644 |
39DAP/reference | 1.05499 | 0.451 |
41DAP/reference | 0.81186 | 0.058 |
42DAP/reference | 1.00865 | 0.816 |
43DAP/reference | 1.3078 | 0.336 |
47DAP/reference | 1.17242 | 0.388 |
52DAP/reference | 1.02058 | 0.941 |
57DAP/reference | 1.15732 | 0.531 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94339 | 1 |
26DAP/20DAP | 0.88266 | 0.512 |
34DAP/26DAP | 0.96067 | 0.803 |
51DAP/34DAP | 0.73046 | 0.094 |
52DAP/51DAP | 1.03252 | 0.904 |
53DAP/52DAP | 0.85641 | 0.212 |
55DAP/53DAP | 0.95278 | 0.698 |
57DAP/55DAP | 1.091 | 0.87 |
62DAP/57DAP | 1.10643 | 1 |
68DAP/62DAP | 0.73843 | 0.314 |
68DAP/14DAP | 0.60594 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.60563 | 0.029 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.80329 | 0.058 |
Immature Eggplant/Mature Eggplant | 0.96355 | |
Ripe Pepper/Ripe Tomato | 1.14843 | 1 |
Mature Eggplant/Ripe Tomato | 0.72518 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.01678 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.84206 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.0191 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.41582 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.83566 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.12137 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.99822 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.03698 | 1 |
IL12-4/WTpooled | 1.02584 | 1 |
IL1-4/WTpooled | 0.92734 | 0.834 |
WT/WTpooled | 1.00416 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11379 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03749 | 0.921 |
DC3000/delta hrp 6h | 0.7615 | 0.95 |
DC3000/delta hrp 12h | 1.22969 | 1 |
DC3000/delta hrp 24h | 1.12597 | 0.37 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.54126 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.54991 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.11575 | 1 |
Exp 36h | 1.02993 | 1 |
Exp 60h | 1.00214 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0244 | 1 |
Var 0h | 0.54157 | 0.98 |
Var 12h I row2-row1 | 0.81787 | 0.338 |
Var 12h NI row2-row1 | 0.89711 | 0.82 |
Var 36h I row2-row1 | 1.22956 | 0.309 |
Var 36h NI row2-row1 | 1.22571 | 1 |
Var 60h I row2-row1 | 0.9063 | 0.439 |
Var 60h NI row2-row1 | 1.03156 | 1 |
Time course 0hI-0hNI | 1.10008 | 0.662 |
Time course 12hI-12hNI | 0.95408 | 0.668 |
Time course 36hI-36hNI | 0.91186 | 0.08 |
Time course 60hI-60hNI | 0.31436 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91456 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 0.90744 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.00527 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.74487 | 0.042 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.66256 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93446 | 1 |
Manapal/WT (break) | 1.06757 | 1 |
Manapal/WT (red) | 1.43888 | 0.222 |
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