Expression of 1-1-5.4.14.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.759930.114
27DAP/17DAP0.864770.589
39DAP/27DAP0.884610.583
41DAP/39DAP0.991850.925
42DAP/41DAP1.074661
43DAP/42DAP1.135481
47DAP/43DAP1.247020.633
52DAP/47DAP0.976030.799
57DAP/52DAP1.169040.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.290210.02
17DAP/reference1.144120.089
27DAP/reference1.044440.339
39DAP/reference1.10020.413
41DAP/reference1.349930.014
42DAP/reference1.411570.001
43DAP/reference1.023930.928
47DAP/reference1.269070.002
52DAP/reference1.304710.017
57DAP/reference1.320020.28

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.757430.085
27DAP/17DAP0.951840.821
39DAP/27DAP0.717110.068
41DAP/39DAP0.542580.034
42DAP/41DAP1.007110.899
43DAP/42DAP1.372660.021
47DAP/43DAP0.844850.042
52DAP/47DAP0.894730.24
57DAP/52DAP0.962810.716
57DAP/7DAP0.62781

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992050.682
17DAP/reference0.850410.082
27DAP/reference0.852350.082
39DAP/reference0.885050.034
41DAP/reference0.936750.311
42DAP/reference0.865130.189
43DAP/reference0.995250.637
47DAP/reference1.082260.67
52DAP/reference1.009040.802
57DAP/reference1.102650.468

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.416250.072
17DAP/reference1.838330.009
27DAP/reference1.466720.026
39DAP/reference1.677440.011
41DAP/reference1.510770.006
42DAP/reference1.642530.008
43DAP/reference1.323260.485
47DAP/reference1.479250.008
52DAP/reference1.700780.006
57DAP/reference1.721160.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.841680.087
17DAP/reference1.065130.814
27DAP/reference1.029590.644
39DAP/reference1.054990.451
41DAP/reference0.811860.058
42DAP/reference1.008650.816
43DAP/reference1.30780.336
47DAP/reference1.172420.388
52DAP/reference1.020580.941
57DAP/reference1.157320.531

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.943391
26DAP/20DAP0.882660.512
34DAP/26DAP0.960670.803
51DAP/34DAP0.730460.094
52DAP/51DAP1.032520.904
53DAP/52DAP0.856410.212
55DAP/53DAP0.952780.698
57DAP/55DAP1.0910.87
62DAP/57DAP1.106431
68DAP/62DAP0.738430.314
68DAP/14DAP0.605940.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.605630.029

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.803290.058
Immature Eggplant/Mature Eggplant0.96355
Ripe Pepper/Ripe Tomato1.148431
Mature Eggplant/Ripe Tomato0.72518

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.01678
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.84206
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.01911
4-3/M82N/AN/A
5-3/M821.41582
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.83566
7-2/M82N/AN/A
9-3-2/M821.12137

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.998221
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.036981
IL12-4/WTpooled1.025841
IL1-4/WTpooled0.927340.834
WT/WTpooled1.004161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.113791

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.037490.921
DC3000/delta hrp 6h0.76150.95
DC3000/delta hrp 12h1.229691
DC3000/delta hrp 24h1.125970.37

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.541260.024
DC3000 delta B/DC3000 delta AB0.549910.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.115751
Exp 36h1.029931
Exp 60h1.002141

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02441
Var 0h0.541570.98
Var 12h I row2-row10.817870.338
Var 12h NI row2-row10.897110.82
Var 36h I row2-row11.229560.309
Var 36h NI row2-row11.225711
Var 60h I row2-row10.90630.439
Var 60h NI row2-row11.031561
Time course 0hI-0hNI1.100080.662
Time course 12hI-12hNI0.954080.668
Time course 36hI-36hNI0.911860.08
Time course 60hI-60hNI0.314360.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.914560.454
transgenic ySAMdc/azygous control (breaker)0.907440.49
transgenic ySAMdc/azygous control (red)1.005271

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.744870.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.662560.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.934461
Manapal/WT (break)1.067571
Manapal/WT (red)1.438880.222