Expression of 1-1-5.4.14.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.58477 | 0.045 |
27DAP/17DAP | 1.67104 | 0.38 |
39DAP/27DAP | 1.33816 | 0.903 |
41DAP/39DAP | 1.19348 | 0.584 |
42DAP/41DAP | 1.13677 | 0.941 |
43DAP/42DAP | 0.92424 | 0.888 |
47DAP/43DAP | 1.0597 | 0.926 |
52DAP/47DAP | 1.50317 | 0.331 |
57DAP/52DAP | 1.04142 | 0.988 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26039 | 0.009 |
17DAP/reference | 1.26005 | 0.033 |
27DAP/reference | 1.2998 | 0.014 |
39DAP/reference | 1.10721 | 0.343 |
41DAP/reference | 1.21157 | 0.085 |
42DAP/reference | 1.361 | 0.006 |
43DAP/reference | 1.16131 | 0.012 |
47DAP/reference | 1.45273 | 0.001 |
52DAP/reference | 1.43248 | 0.015 |
57DAP/reference | 1.34134 | 0.035 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89308 | 0.428 |
27DAP/17DAP | 0.92744 | 0.748 |
39DAP/27DAP | 1.50764 | 0.062 |
41DAP/39DAP | 2.44169 | 0.006 |
42DAP/41DAP | 0.61366 | 0.021 |
43DAP/42DAP | 1.04649 | 0.446 |
47DAP/43DAP | 1.45214 | 0.016 |
52DAP/47DAP | 1.0643 | 0.81 |
57DAP/52DAP | 0.89229 | 0.428 |
57DAP/7DAP | 1.0469 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.53355 | 0.033 |
17DAP/reference | 1.68462 | 0.006 |
27DAP/reference | 1.70365 | 0.012 |
39DAP/reference | 1.72512 | 0.005 |
41DAP/reference | 1.8784 | 0.01 |
42DAP/reference | 1.72054 | 0.007 |
43DAP/reference | 2.03709 | 0.007 |
47DAP/reference | 1.58179 | 0.017 |
52DAP/reference | 1.65503 | 0.007 |
57DAP/reference | 1.81323 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9434 | 0.487 |
17DAP/reference | 1.40088 | 0.007 |
27DAP/reference | 1.61921 | 0.012 |
39DAP/reference | 1.50899 | 0.011 |
41DAP/reference | 1.37429 | 0.009 |
42DAP/reference | 1.41805 | 0.009 |
43DAP/reference | 1.16608 | 0.89 |
47DAP/reference | 1.61406 | 0.008 |
52DAP/reference | 1.385 | 0.008 |
57DAP/reference | 1.23552 | 0.15 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44315 | 0.027 |
17DAP/reference | 1.09404 | 0.72 |
27DAP/reference | 1.92149 | 0.015 |
39DAP/reference | 1.78773 | 0.004 |
41DAP/reference | 1.45745 | 0.027 |
42DAP/reference | 1.37519 | 0.029 |
43DAP/reference | 1.50041 | 0.012 |
47DAP/reference | 1.21378 | 0.044 |
52DAP/reference | 2.06389 | 0.036 |
57DAP/reference | 1.6634 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.20523 | 0.786 |
26DAP/20DAP | 0.86818 | 1 |
34DAP/26DAP | 0.95738 | 0.98 |
51DAP/34DAP | 1.09695 | 0.854 |
52DAP/51DAP | 1.24131 | 0.387 |
53DAP/52DAP | 1.04293 | 1 |
55DAP/53DAP | 1.21872 | 0.33 |
57DAP/55DAP | 2.22836 | 0.865 |
62DAP/57DAP | 0.88423 | 0.162 |
68DAP/62DAP | 1.13569 | 0.729 |
68DAP/14DAP | 1.19113 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.16962 | 0.087 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.8807 | 0.377 |
Mature Green Tomato/Ripe Tomato | 0.35937 | 0.148 |
Immature Eggplant/Mature Eggplant | 0.99489 | 1 |
Ripe Pepper/Ripe Tomato | 1.03539 | 1 |
Mature Eggplant/Ripe Tomato | 0.15546 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.70152 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.65004 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 3.61266 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.25394 | |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.1708 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.70622 | 0.277 |
IL2-6/WTpooled | 0.96823 | 1 |
IL7-5/WTpooled | 1.93121 | 0.792 |
IL7-3/WTpooled | 0.57612 | 0.31 |
IL12-4/WTpooled | 0.81614 | 0.71 |
IL1-4/WTpooled | 0.72344 | 0.562 |
WT/WTpooled | 1.10845 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 2.71511 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11425 | 0.921 |
DC3000/delta hrp 6h | 0.92911 | 0.95 |
DC3000/delta hrp 12h | 0.97846 | 1 |
DC3000/delta hrp 24h | 2.70425 | 0.192 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.70434 | |
DC3000 delta B/DC3000 delta AB | 2.02709 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.21871 | 1 |
Exp 36h | 1.23127 | 0.693 |
Exp 60h | 1.46557 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.16727 | 1 |
Var 0h | 1.00138 | 1 |
Var 12h I row2-row1 | 0.74397 | 0.467 |
Var 12h NI row2-row1 | 2.47337 | 0.649 |
Var 36h I row2-row1 | 1.5514 | 0.309 |
Var 36h NI row2-row1 | 0.71297 | 0.478 |
Var 60h I row2-row1 | 1.32769 | 0.543 |
Var 60h NI row2-row1 | 0.59731 | 0.483 |
Time course 0hI-0hNI | 0.93059 | 0.867 |
Time course 12hI-12hNI | 0.92632 | 0.742 |
Time course 36hI-36hNI | 8.44157 | 0.004 |
Time course 60hI-60hNI | 6.97998 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.16378 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 0.46363 | 0.119 |
transgenic ySAMdc/azygous control (red) | 0.86049 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.20057 | 0.089 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.76373 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.50492 | 0.172 |
Manapal/WT (break) | 0.90737 | 1 |
Manapal/WT (red) | 0.39092 | 0.184 |
|
|