Expression of 1-1-5.4.14.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.081430.863
27DAP/17DAP0.963470.945
39DAP/27DAP0.848680.507
41DAP/39DAP0.742330.225
42DAP/41DAP1.099020.986
43DAP/42DAP0.802970.551
47DAP/43DAP0.916190.663
52DAP/47DAP0.867110.627
57DAP/52DAP1.085980.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.493640.036
17DAP/reference1.052570.399
27DAP/reference1.016470.981
39DAP/reference1.035530.786
41DAP/reference1.081250.624
42DAP/reference0.918110.015
43DAP/reference0.945840.394
47DAP/reference0.888620.083
52DAP/reference0.969930.438
57DAP/reference0.930090.248

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.951770.595
27DAP/17DAP1.405810.04
39DAP/27DAP0.78410.132
41DAP/39DAP1.218780.371
42DAP/41DAP0.867950.216
43DAP/42DAP0.864410.038
47DAP/43DAP1.062330.892
52DAP/47DAP0.865590.71
57DAP/52DAP1.032890.906
57DAP/7DAP0.941451

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.458620.049
17DAP/reference1.283910.014
27DAP/reference1.135290.131
39DAP/reference1.032730.669
41DAP/reference1.400730.109
42DAP/reference1.064590.534
43DAP/reference1.243910.053
47DAP/reference1.03840.915
52DAP/reference0.957410.435
57DAP/reference1.124320.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.356610.069
17DAP/reference1.241140.009
27DAP/reference1.140380.131
39DAP/reference1.023191
41DAP/reference0.991490.557
42DAP/reference1.1260.317
43DAP/reference1.300080.077
47DAP/reference1.044970.197
52DAP/reference0.986310.576
57DAP/reference0.976870.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.383220.025
17DAP/reference1.330260.182
27DAP/reference1.364480.023
39DAP/reference1.192680.043
41DAP/reference1.026180.984
42DAP/reference0.997331
43DAP/reference1.134870.343
47DAP/reference0.99930.708
52DAP/reference2.740240.209
57DAP/reference1.02090.842

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.268160.966
26DAP/20DAP0.981
34DAP/26DAP0.961220.917
51DAP/34DAP1.120980.637
52DAP/51DAP0.966111
53DAP/52DAP1.099370.768
55DAP/53DAP1.006730.939
57DAP/55DAP1.212840.694
62DAP/57DAP1.117190.678
68DAP/62DAP0.782670.076
68DAP/14DAP0.818280.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.654910.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.095510.089
Mature Green Tomato/Ripe Tomato2.17620.022
Immature Eggplant/Mature Eggplant1.491690.05
Ripe Pepper/Ripe Tomato1.43051
Mature Eggplant/Ripe Tomato3.565320.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.04930.877
1-1-2/M821.16260.977
12-2/M821.05141
12-4/M820.960151
1-3/M82N/AN/A
2-1-1/M820.6745
2-1/M82N/AN/A
2-6/M821.15618
3-2/M821.002931
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.25374
4-3/M821.10377
5-3/M820.924251
6-2/M821.01304
6-3/M821.02631
7-1/M821.19121
7-2/M820.8558
9-3-2/M821.426570.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.29650.456
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.852260.418
IL12-4/WTpooled1.034090.891
IL1-4/WTpooled1.04627
WT/WTpooled1.012791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.661520.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.062390.652
DC3000/delta hrp 6h1.070151
DC3000/delta hrp 12h1.022511
DC3000/delta hrp 24h0.918030.363

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.855190.161
DC3000 delta B/DC3000 delta AB0.833510.217

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.826521
Exp 36h0.713140.434
Exp 60h0.764910.253

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.053821
Var 0h0.885940.261
Var 12h I row2-row10.823870.627
Var 12h NI row2-row11.197340.34
Var 36h I row2-row10.979841
Var 36h NI row2-row11.003751
Var 60h I row2-row10.979880.952
Var 60h NI row2-row11.041011
Time course 0hI-0hNI1.063950.764
Time course 12hI-12hNI0.989730.968
Time course 36hI-36hNI0.869120.183
Time course 60hI-60hNI0.52530.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.923860.485
transgenic ySAMdc/azygous control (breaker)0.861610.173
transgenic ySAMdc/azygous control (red)1.009941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.059780.17

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.628410.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.925331
Manapal/WT (break)1.280440.14
Manapal/WT (red)0.9550.607