Expression of 1-1-5.4.14.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08143 | 0.863 |
27DAP/17DAP | 0.96347 | 0.945 |
39DAP/27DAP | 0.84868 | 0.507 |
41DAP/39DAP | 0.74233 | 0.225 |
42DAP/41DAP | 1.09902 | 0.986 |
43DAP/42DAP | 0.80297 | 0.551 |
47DAP/43DAP | 0.91619 | 0.663 |
52DAP/47DAP | 0.86711 | 0.627 |
57DAP/52DAP | 1.08598 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.49364 | 0.036 |
17DAP/reference | 1.05257 | 0.399 |
27DAP/reference | 1.01647 | 0.981 |
39DAP/reference | 1.03553 | 0.786 |
41DAP/reference | 1.08125 | 0.624 |
42DAP/reference | 0.91811 | 0.015 |
43DAP/reference | 0.94584 | 0.394 |
47DAP/reference | 0.88862 | 0.083 |
52DAP/reference | 0.96993 | 0.438 |
57DAP/reference | 0.93009 | 0.248 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95177 | 0.595 |
27DAP/17DAP | 1.40581 | 0.04 |
39DAP/27DAP | 0.7841 | 0.132 |
41DAP/39DAP | 1.21878 | 0.371 |
42DAP/41DAP | 0.86795 | 0.216 |
43DAP/42DAP | 0.86441 | 0.038 |
47DAP/43DAP | 1.06233 | 0.892 |
52DAP/47DAP | 0.86559 | 0.71 |
57DAP/52DAP | 1.03289 | 0.906 |
57DAP/7DAP | 0.94145 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45862 | 0.049 |
17DAP/reference | 1.28391 | 0.014 |
27DAP/reference | 1.13529 | 0.131 |
39DAP/reference | 1.03273 | 0.669 |
41DAP/reference | 1.40073 | 0.109 |
42DAP/reference | 1.06459 | 0.534 |
43DAP/reference | 1.24391 | 0.053 |
47DAP/reference | 1.0384 | 0.915 |
52DAP/reference | 0.95741 | 0.435 |
57DAP/reference | 1.12432 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35661 | 0.069 |
17DAP/reference | 1.24114 | 0.009 |
27DAP/reference | 1.14038 | 0.131 |
39DAP/reference | 1.02319 | 1 |
41DAP/reference | 0.99149 | 0.557 |
42DAP/reference | 1.126 | 0.317 |
43DAP/reference | 1.30008 | 0.077 |
47DAP/reference | 1.04497 | 0.197 |
52DAP/reference | 0.98631 | 0.576 |
57DAP/reference | 0.97687 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38322 | 0.025 |
17DAP/reference | 1.33026 | 0.182 |
27DAP/reference | 1.36448 | 0.023 |
39DAP/reference | 1.19268 | 0.043 |
41DAP/reference | 1.02618 | 0.984 |
42DAP/reference | 0.99733 | 1 |
43DAP/reference | 1.13487 | 0.343 |
47DAP/reference | 0.9993 | 0.708 |
52DAP/reference | 2.74024 | 0.209 |
57DAP/reference | 1.0209 | 0.842 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.26816 | 0.966 |
26DAP/20DAP | 0.98 | 1 |
34DAP/26DAP | 0.96122 | 0.917 |
51DAP/34DAP | 1.12098 | 0.637 |
52DAP/51DAP | 0.96611 | 1 |
53DAP/52DAP | 1.09937 | 0.768 |
55DAP/53DAP | 1.00673 | 0.939 |
57DAP/55DAP | 1.21284 | 0.694 |
62DAP/57DAP | 1.11719 | 0.678 |
68DAP/62DAP | 0.78267 | 0.076 |
68DAP/14DAP | 0.81828 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.65491 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.09551 | 0.089 |
Mature Green Tomato/Ripe Tomato | 2.1762 | 0.022 |
Immature Eggplant/Mature Eggplant | 1.49169 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.4305 | 1 |
Mature Eggplant/Ripe Tomato | 3.56532 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0493 | 0.877 |
1-1-2/M82 | 1.1626 | 0.977 |
12-2/M82 | 1.05141 | |
12-4/M82 | 0.96015 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.6745 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.15618 | |
3-2/M82 | 1.00293 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.25374 | |
4-3/M82 | 1.10377 | |
5-3/M82 | 0.92425 | 1 |
6-2/M82 | 1.01304 | |
6-3/M82 | 1.02631 | |
7-1/M82 | 1.19121 | |
7-2/M82 | 0.8558 | |
9-3-2/M82 | 1.42657 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.2965 | 0.456 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.85226 | 0.418 |
IL12-4/WTpooled | 1.03409 | 0.891 |
IL1-4/WTpooled | 1.04627 | |
WT/WTpooled | 1.01279 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.66152 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06239 | 0.652 |
DC3000/delta hrp 6h | 1.07015 | 1 |
DC3000/delta hrp 12h | 1.02251 | 1 |
DC3000/delta hrp 24h | 0.91803 | 0.363 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.85519 | 0.161 |
DC3000 delta B/DC3000 delta AB | 0.83351 | 0.217 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.82652 | 1 |
Exp 36h | 0.71314 | 0.434 |
Exp 60h | 0.76491 | 0.253 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05382 | 1 |
Var 0h | 0.88594 | 0.261 |
Var 12h I row2-row1 | 0.82387 | 0.627 |
Var 12h NI row2-row1 | 1.19734 | 0.34 |
Var 36h I row2-row1 | 0.97984 | 1 |
Var 36h NI row2-row1 | 1.00375 | 1 |
Var 60h I row2-row1 | 0.97988 | 0.952 |
Var 60h NI row2-row1 | 1.04101 | 1 |
Time course 0hI-0hNI | 1.06395 | 0.764 |
Time course 12hI-12hNI | 0.98973 | 0.968 |
Time course 36hI-36hNI | 0.86912 | 0.183 |
Time course 60hI-60hNI | 0.5253 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92386 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 0.86161 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.00994 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05978 | 0.17 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.62841 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92533 | 1 |
Manapal/WT (break) | 1.28044 | 0.14 |
Manapal/WT (red) | 0.955 | 0.607 |
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