Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.4.14.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.30228	0.961
27DAP/17DAP	1.46568	0.849
39DAP/27DAP	1.19468	0.595
41DAP/39DAP	0.84407	0.478
42DAP/41DAP	0.91276	1
43DAP/42DAP	1.54709	0.88
47DAP/43DAP	1.427	0.825
52DAP/47DAP	1.31544	0.876
57DAP/52DAP	0.61691	0.462

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.81629	0.019
17DAP/reference	1.36825	0.229
27DAP/reference	1.29334	0.498
39DAP/reference	1.45085	0.871
41DAP/reference	1.382	0.073
42DAP/reference	1.04654	1
43DAP/reference	0.53223
47DAP/reference	0.90813	0.242
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.80435
27DAP/17DAP	0.64899	0.279
39DAP/27DAP	0.56881	0.198
41DAP/39DAP	1.58702	0.612
42DAP/41DAP	0.79068	0.248
43DAP/42DAP	2.27601	0.032
47DAP/43DAP	1.09748	0.873
52DAP/47DAP	1.03413	0.982
57DAP/52DAP	N/A	N/A
57DAP/7DAP	0.87207	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99222	0.682
17DAP/reference	0.94105	0.024
27DAP/reference	0.93566	0.012
39DAP/reference	0.89088	0.017
41DAP/reference	0.94754	0.07
42DAP/reference	0.94739	0.018
43DAP/reference	0.91688	0.035
47DAP/reference	0.85394	0.033
52DAP/reference	0.89198	0.02
57DAP/reference	0.89117	0.031

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.08444
17DAP/reference	1.22965	0.773
27DAP/reference	1.1267	0.81
39DAP/reference	0.99235	0.642
41DAP/reference	1.64981
42DAP/reference	2.16528	0.569
43DAP/reference	1.35444	0.279
47DAP/reference	1.12936	0.621
52DAP/reference	1.4969	0.014
57DAP/reference	1.48598	0.755

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.01674	1
17DAP/reference	1.0508	0.572
27DAP/reference	0.94336	0.056
39DAP/reference	0.94104	0.026
41DAP/reference	0.90625	0.022
42DAP/reference	0.83658	0.016
43DAP/reference	0.8227	0.019
47DAP/reference	N/A	N/A
52DAP/reference	0.80691	0.139
57DAP/reference	0.58625	0.191

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.12574	0.966
26DAP/20DAP	0.68896	1
34DAP/26DAP	1.0793	1
51DAP/34DAP	1.65369	0.637
52DAP/51DAP	0.70679	1
53DAP/52DAP	1.36889	0.921
55DAP/53DAP	0.77218	0.376
57DAP/55DAP	0.76498	0.596
62DAP/57DAP	1.20416	0.902
68DAP/62DAP	1.73769
68DAP/14DAP	2.15254	0.029

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.12314	0.635

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.95259	1
IL2-6/WTpooled	0.51961	0.358
IL7-5/WTpooled	1.06778	1
IL7-3/WTpooled	0.89277	1
IL12-4/WTpooled	0.97144	1
IL1-4/WTpooled	0.94757	1
WT/WTpooled	1.06319	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.02157	1
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A