Expression of 1-1-5.4.15.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.31116 | 0.381 |
27DAP/17DAP | 1.15665 | 0.881 |
39DAP/27DAP | 1.65321 | 0.057 |
41DAP/39DAP | 0.62036 | 0.055 |
42DAP/41DAP | 1.15595 | 0.978 |
43DAP/42DAP | 1.08729 | 1 |
47DAP/43DAP | 0.91937 | 0.701 |
52DAP/47DAP | 0.98493 | 0.774 |
57DAP/52DAP | 1.73669 | 0.725 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41132 | 0.078 |
17DAP/reference | 1.30117 | 0.014 |
27DAP/reference | 1.64308 | 0.008 |
39DAP/reference | 1.33562 | 0.014 |
41DAP/reference | 1.38658 | 0.013 |
42DAP/reference | 1.91253 | 0.001 |
43DAP/reference | 1.29774 | 0.014 |
47DAP/reference | 2.07014 | 0.001 |
52DAP/reference | 2.60317 | 0.008 |
57DAP/reference | 2.26892 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.82169 | 0.039 |
27DAP/17DAP | 1.17566 | 0.403 |
39DAP/27DAP | 0.90464 | 0.371 |
41DAP/39DAP | 1.29623 | 0.895 |
42DAP/41DAP | 1.20105 | 0.47 |
43DAP/42DAP | 0.71001 | 0.026 |
47DAP/43DAP | 0.99822 | 0.947 |
52DAP/47DAP | 1.17013 | 0.593 |
57DAP/52DAP | 1.32463 | 0.104 |
57DAP/7DAP | 1.69095 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.72633 | 0.037 |
17DAP/reference | 1.7704 | 0.007 |
27DAP/reference | 2.10455 | 0.007 |
39DAP/reference | 2.35102 | 0.005 |
41DAP/reference | 2.25174 | 0.008 |
42DAP/reference | 2.2866 | 0.007 |
43DAP/reference | 2.25302 | 0.006 |
47DAP/reference | 2.35983 | 0.017 |
52DAP/reference | 2.7918 | 0.007 |
57DAP/reference | 2.45634 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94828 | 0.548 |
17DAP/reference | 1.40275 | 0.06 |
27DAP/reference | 2.12259 | 0.013 |
39DAP/reference | 2.09501 | 0.011 |
41DAP/reference | 2.09898 | 0.007 |
42DAP/reference | 2.03975 | 0.007 |
43DAP/reference | 1.02982 | 0.62 |
47DAP/reference | 1.45782 | 0.011 |
52DAP/reference | 1.58015 | 0.006 |
57DAP/reference | 1.1019 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05922 | 0.493 |
17DAP/reference | 1.08506 | 0.657 |
27DAP/reference | 1.64404 | 0.017 |
39DAP/reference | 1.94357 | 0.006 |
41DAP/reference | 1.56277 | 0.008 |
42DAP/reference | 1.76263 | 0.013 |
43DAP/reference | 2.20084 | 0.007 |
47DAP/reference | 1.37515 | 0.147 |
52DAP/reference | 1.62618 | 0.058 |
57DAP/reference | 2.32209 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 26.1824 | |
26DAP/20DAP | 2.07024 | 0.097 |
34DAP/26DAP | 0.91466 | 0.763 |
51DAP/34DAP | 1.15956 | 0.524 |
52DAP/51DAP | 0.99381 | 1 |
53DAP/52DAP | 1.09854 | 0.384 |
55DAP/53DAP | 0.73323 | 0.023 |
57DAP/55DAP | 1.15603 | 0.424 |
62DAP/57DAP | 0.75609 | 0.162 |
68DAP/62DAP | 1.07121 | 1 |
68DAP/14DAP | 0.95754 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.48875 | 0.024 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.84386 | 0.304 |
Mature Green Tomato/Ripe Tomato | 0.7933 | |
Immature Eggplant/Mature Eggplant | 1.23386 | 0.072 |
Ripe Pepper/Ripe Tomato | 2.09863 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.81776 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.81245 | 0.736 |
1-1-2/M82 | 1.19543 | 0.977 |
12-2/M82 | 0.91632 | 0.678 |
12-4/M82 | 1.17755 | 1 |
1-3/M82 | 2.32491 | 0.255 |
2-1-1/M82 | 1.1005 | 0.764 |
2-1/M82 | 0.80047 | 0.322 |
2-6/M82 | 0.90274 | 1 |
3-2/M82 | 1.22314 | 0.967 |
4-1-1/M82 | 1.10345 | 1 |
4-1/M82 | 1.7444 | 1 |
4-3-2/M82 | 1.15092 | 0.508 |
4-3/M82 | 1.15343 | 0.268 |
5-3/M82 | 1.06288 | 1 |
6-2/M82 | 1.18819 | |
6-3/M82 | 1.11975 | 1 |
7-1/M82 | 1.02593 | 1 |
7-2/M82 | 1.39858 | 1 |
9-3-2/M82 | 1.19587 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.21429 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.04561 | 1 |
IL12-4/WTpooled | 1.16441 | 0.839 |
IL1-4/WTpooled | 1.24508 | 1 |
WT/WTpooled | 1.01472 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14821 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04382 | 0.921 |
DC3000/delta hrp 6h | 0.94497 | 0.95 |
DC3000/delta hrp 12h | 1.12486 | 1 |
DC3000/delta hrp 24h | 1.25971 | 0.192 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.27699 | 0.044 |
DC3000 delta B/DC3000 delta AB | 1.33988 | 0.09 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.44154 | 1 |
Exp 36h | 0.6874 | 0.623 |
Exp 60h | 1.12013 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02048 | 1 |
Var 0h | 0.55302 | 0.933 |
Var 12h I row2-row1 | 1.05042 | 0.692 |
Var 12h NI row2-row1 | 1.15352 | 0.281 |
Var 36h I row2-row1 | 1.15253 | 0.742 |
Var 36h NI row2-row1 | 0.71581 | 0.584 |
Var 60h I row2-row1 | 0.92723 | 0.285 |
Var 60h NI row2-row1 | 0.88621 | 0.458 |
Time course 0hI-0hNI | 1.02098 | 1 |
Time course 12hI-12hNI | 1.0141 | 0.892 |
Time course 36hI-36hNI | 1.35333 | 0.006 |
Time course 60hI-60hNI | 2.01634 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08019 | 0.261 |
transgenic ySAMdc/azygous control (breaker) | 0.50891 | 0.125 |
transgenic ySAMdc/azygous control (red) | 0.78818 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.21758 | 0.059 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.83294 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.56718 | 0.172 |
Manapal/WT (break) | 1.02306 | 1 |
Manapal/WT (red) | 0.83318 | 0.274 |
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