Expression of 1-1-5.4.15.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.311160.381
27DAP/17DAP1.156650.881
39DAP/27DAP1.653210.057
41DAP/39DAP0.620360.055
42DAP/41DAP1.155950.978
43DAP/42DAP1.087291
47DAP/43DAP0.919370.701
52DAP/47DAP0.984930.774
57DAP/52DAP1.736690.725

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.411320.078
17DAP/reference1.301170.014
27DAP/reference1.643080.008
39DAP/reference1.335620.014
41DAP/reference1.386580.013
42DAP/reference1.912530.001
43DAP/reference1.297740.014
47DAP/reference2.070140.001
52DAP/reference2.603170.008
57DAP/reference2.268920.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.821690.039
27DAP/17DAP1.175660.403
39DAP/27DAP0.904640.371
41DAP/39DAP1.296230.895
42DAP/41DAP1.201050.47
43DAP/42DAP0.710010.026
47DAP/43DAP0.998220.947
52DAP/47DAP1.170130.593
57DAP/52DAP1.324630.104
57DAP/7DAP1.690951

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.726330.037
17DAP/reference1.77040.007
27DAP/reference2.104550.007
39DAP/reference2.351020.005
41DAP/reference2.251740.008
42DAP/reference2.28660.007
43DAP/reference2.253020.006
47DAP/reference2.359830.017
52DAP/reference2.79180.007
57DAP/reference2.456340.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.948280.548
17DAP/reference1.402750.06
27DAP/reference2.122590.013
39DAP/reference2.095010.011
41DAP/reference2.098980.007
42DAP/reference2.039750.007
43DAP/reference1.029820.62
47DAP/reference1.457820.011
52DAP/reference1.580150.006
57DAP/reference1.10190.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.059220.493
17DAP/reference1.085060.657
27DAP/reference1.644040.017
39DAP/reference1.943570.006
41DAP/reference1.562770.008
42DAP/reference1.762630.013
43DAP/reference2.200840.007
47DAP/reference1.375150.147
52DAP/reference1.626180.058
57DAP/reference2.322090.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP26.1824
26DAP/20DAP2.070240.097
34DAP/26DAP0.914660.763
51DAP/34DAP1.159560.524
52DAP/51DAP0.993811
53DAP/52DAP1.098540.384
55DAP/53DAP0.733230.023
57DAP/55DAP1.156030.424
62DAP/57DAP0.756090.162
68DAP/62DAP1.071211
68DAP/14DAP0.957541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.488750.024

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.843860.304
Mature Green Tomato/Ripe Tomato0.7933
Immature Eggplant/Mature Eggplant1.233860.072
Ripe Pepper/Ripe Tomato2.098630.258
Mature Eggplant/Ripe Tomato0.817761

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.812450.736
1-1-2/M821.195430.977
12-2/M820.916320.678
12-4/M821.177551
1-3/M822.324910.255
2-1-1/M821.10050.764
2-1/M820.800470.322
2-6/M820.902741
3-2/M821.223140.967
4-1-1/M821.103451
4-1/M821.74441
4-3-2/M821.150920.508
4-3/M821.153430.268
5-3/M821.062881
6-2/M821.18819
6-3/M821.119751
7-1/M821.025931
7-2/M821.398581
9-3-2/M821.195871

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.21429
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.045611
IL12-4/WTpooled1.164410.839
IL1-4/WTpooled1.245081
WT/WTpooled1.014721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.148211

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.043820.921
DC3000/delta hrp 6h0.944970.95
DC3000/delta hrp 12h1.124861
DC3000/delta hrp 24h1.259710.192

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.276990.044
DC3000 delta B/DC3000 delta AB1.339880.09

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.441541
Exp 36h0.68740.623
Exp 60h1.120131

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020481
Var 0h0.553020.933
Var 12h I row2-row11.050420.692
Var 12h NI row2-row11.153520.281
Var 36h I row2-row11.152530.742
Var 36h NI row2-row10.715810.584
Var 60h I row2-row10.927230.285
Var 60h NI row2-row10.886210.458
Time course 0hI-0hNI1.020981
Time course 12hI-12hNI1.01410.892
Time course 36hI-36hNI1.353330.006
Time course 60hI-60hNI2.016340.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.080190.261
transgenic ySAMdc/azygous control (breaker)0.508910.125
transgenic ySAMdc/azygous control (red)0.788181

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.217580.059

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.832940.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.567180.172
Manapal/WT (break)1.023061
Manapal/WT (red)0.833180.274