Expression of 1-1-5.4.16.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.900910.464
27DAP/17DAP1.158260.836
39DAP/27DAP1.009780.82
41DAP/39DAP0.986620.911
42DAP/41DAP1.069851
43DAP/42DAP0.963830.91
47DAP/43DAP1.373960.355
52DAP/47DAP1.460280.381
57DAP/52DAP0.995660.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.062980.567
17DAP/reference0.899720.085
27DAP/reference0.886570.027
39DAP/reference0.940550.228
41DAP/reference0.886350.031
42DAP/reference1.165320.003
43DAP/reference1.0430.518
47DAP/reference1.097630.023
52DAP/reference1.100310.354
57DAP/reference1.057950.6

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.905830.238
27DAP/17DAP1.036730.909
39DAP/27DAP1.084870.499
41DAP/39DAP1.058050.849
42DAP/41DAP1.055820.582
43DAP/42DAP1.137870.031
47DAP/43DAP1.105890.618
52DAP/47DAP0.9540.746
57DAP/52DAP0.967730.697
57DAP/7DAP1.046331

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.31937
17DAP/reference0.950710.025
27DAP/reference0.912460.051
39DAP/reference0.946420.073
41DAP/reference1.06668
42DAP/reference0.942340.011
43DAP/reference1.059130.923
47DAP/reference0.949210.293
52DAP/reference0.924350.077
57DAP/reference0.973980.494

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.056920.538
17DAP/reference1.038560.658
27DAP/reference1.116470.388
39DAP/reference1.109860.377
41DAP/reference1.063270.846
42DAP/reference1.061580.398
43DAP/reference1.149230.447
47DAP/reference1.030240.513
52DAP/reference1.148070.009
57DAP/reference1.102580.306

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.958140.127
17DAP/reference1.099570.657
27DAP/reference1.003781
39DAP/reference0.957580.035
41DAP/reference1.069580.605
42DAP/reference1.160690.576
43DAP/reference1.27030.246
47DAP/reference1.094640.127
52DAP/reference0.966420.69
57DAP/reference1.158910.285

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.929971
26DAP/20DAP0.94990.512
34DAP/26DAP1.13020.819
51DAP/34DAP1.063230.706
52DAP/51DAP0.99731
53DAP/52DAP1.13630.129
55DAP/53DAP1.039510.656
57DAP/55DAP0.840840.178
62DAP/57DAP1.027261
68DAP/62DAP1.262420.689
68DAP/14DAP1.436540.042

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.003661

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.905940.058
Mature Green Tomato/Ripe Tomato0.331230.017
Immature Eggplant/Mature Eggplant1.062790.215
Ripe Pepper/Ripe Tomato0.344460.224
Mature Eggplant/Ripe Tomato1.34301

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.67478
12-2/M82N/AN/A
12-4/M821.30459
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.30951
3-2/M821.01772
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.019111
4-3/M82N/AN/A
5-3/M821.16426
6-2/M821.133121
6-3/M82N/AN/A
7-1/M820.97555
7-2/M82N/AN/A
9-3-2/M821.05580.191

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.43933
IL2-6/WTpooled0.872611
IL7-5/WTpooled0.85665
IL7-3/WTpooled0.862630.418
IL12-4/WTpooled1.10630.673
IL1-4/WTpooled0.937740.562
WT/WTpooled0.893571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.425930.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.964741
DC3000/delta hrp 6h0.982350.95
DC3000/delta hrp 12h1.116431
DC3000/delta hrp 24h1.02840.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.242610.441
DC3000 delta B/DC3000 delta AB1.132640.304

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.182930.254
Exp 36h0.953010.539
Exp 60h1.2910.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.978121
Var 0h0.377120.933
Var 12h I row2-row11.07730.296
Var 12h NI row2-row10.92380.713
Var 36h I row2-row10.908781
Var 36h NI row2-row10.892740.645
Var 60h I row2-row11.040110.562
Var 60h NI row2-row11.004131
Time course 0hI-0hNI1.05350.764
Time course 12hI-12hNI1.12920.122
Time course 36hI-36hNI1.226370.006
Time course 60hI-60hNI1.984750.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.967150.485
transgenic ySAMdc/azygous control (breaker)1.037051
transgenic ySAMdc/azygous control (red)1.171220.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.98390.295

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.750230.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.989451
Manapal/WT (break)1.159970.381
Manapal/WT (red)1.299421