Expression of 1-1-5.4.17.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.385780.198
27DAP/17DAP1.378960.625
39DAP/27DAP0.879570.573
41DAP/39DAP1.100960.814
42DAP/41DAP1.377350.434
43DAP/42DAP1.143281
47DAP/43DAP1.11430.689
52DAP/47DAP1.218810.566
57DAP/52DAP1.152190.87

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.147150.771
17DAP/reference1.032021
27DAP/reference0.945540.406
39DAP/reference1.035880.534
41DAP/reference1.085380.759
42DAP/reference1.12040.324
43DAP/reference0.998040.904
47DAP/reference1.047451
52DAP/reference1.255050.059
57DAP/reference1.291330.025

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.141090.455
27DAP/17DAP1.101670.842
39DAP/27DAP1.105970.496
41DAP/39DAP0.904160.696
42DAP/41DAP1.264870.208
43DAP/42DAP1.029610.83
47DAP/43DAP0.924020.395
52DAP/47DAP0.982050.93
57DAP/52DAP1.063640.783
57DAP/7DAP1.241721

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.852470.078
17DAP/reference0.972260.447
27DAP/reference1.103730.974
39DAP/reference0.885580.198
41DAP/reference0.714070.026
42DAP/reference0.698190.012
43DAP/reference0.88240.11
47DAP/reference0.96260.671
52DAP/reference0.859880.126
57DAP/reference0.897870.149

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.801910.222
17DAP/reference0.862280.134
27DAP/reference1.038160.769
39DAP/reference1.009910.661
41DAP/reference1.011980.584
42DAP/reference1.296610.61
43DAP/reference0.989330.581
47DAP/reference0.863070.107
52DAP/reference1.13570.747
57DAP/reference0.986360.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.012580.804
17DAP/reference0.961370.592
27DAP/reference0.925760.257
39DAP/reference0.935010.299
41DAP/reference1.20320.455
42DAP/reference1.167070.54
43DAP/reference1.157560.336
47DAP/reference1.200370.461
52DAP/reference1.365760.664
57DAP/reference0.918440.353

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.542050.65
26DAP/20DAP0.960081
34DAP/26DAP1.72880.819
51DAP/34DAP1.852980.032
52DAP/51DAP0.812150.151
53DAP/52DAP1.159760.284
55DAP/53DAP0.784540.149
57DAP/55DAP1.376690.915
62DAP/57DAP1.089510.868
68DAP/62DAP0.899060.722
68DAP/14DAP0.84813

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.223190.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.651040.079
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.94978
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.086550.508
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.9884
7-2/M82N/AN/A
9-3-2/M821.21124

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.06045
IL2-6/WTpooled0.904640.473
IL7-5/WTpooled0.889951
IL7-3/WTpooled0.59611
IL12-4/WTpooled1.20350.595
IL1-4/WTpooled0.910920.834
WT/WTpooled1.056731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.12910.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.04509
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.477111
DC3000/delta hrp 24h0.842510.7

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.037691
Var 0h1.465481
Var 12h I row2-row11.026590.473
Var 12h NI row2-row11.040111
Var 36h I row2-row11.201770.908
Var 36h NI row2-row11.45141
Var 60h I row2-row10.875460.582
Var 60h NI row2-row10.868920.483
Time course 0hI-0hNI1.047350.574
Time course 12hI-12hNI1.08290.122
Time course 36hI-36hNI1.197470.07
Time course 60hI-60hNI1.392580.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.720471

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.347260.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.24760.307
Manapal/WT (break)1.029091
Manapal/WT (red)1.049381