Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.4.18.11

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.1555	0.893
27DAP/17DAP	1.42145	0.742
39DAP/27DAP	0.93098	0.663
41DAP/39DAP	0.80505	0.436
42DAP/41DAP	0.95836	1
43DAP/42DAP	1.02911	0.937
47DAP/43DAP	1.41959	0.326
52DAP/47DAP	1.19214	0.709
57DAP/52DAP	1.02672	1

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.88351	0.182
17DAP/reference	1.00224	1
27DAP/reference	0.83096	0.022
39DAP/reference	1.0072	1
41DAP/reference	0.89544	0.154
42DAP/reference	1.01109	1
43DAP/reference	0.90916	0.077
47DAP/reference	1.00272	0.674
52DAP/reference	1.08661	0.335
57DAP/reference	1.09352	0.463

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	5.55768	0.406
27DAP/17DAP	0.77609	0.614
39DAP/27DAP	0.93597	0.648
41DAP/39DAP	1.08018	0.896
42DAP/41DAP	0.67172	0.044
43DAP/42DAP	1.42743	0.585
47DAP/43DAP	0.93283	0.701
52DAP/47DAP	1.09452	0.951
57DAP/52DAP	1.25746	0.726
57DAP/7DAP	0.81062	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.03848	1
17DAP/reference	1.39762	0.01
27DAP/reference	1.28324	0.03
39DAP/reference	1.34614	0.026
41DAP/reference	1.28555	0.056
42DAP/reference	1.31996	0.006
43DAP/reference	1.38483	0.011
47DAP/reference	1.0352	0.98
52DAP/reference	1.18389	0.043
57DAP/reference	1.47617	0.07

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05607	0.832
17DAP/reference	0.80485	0.01
27DAP/reference	0.78692	0.173
39DAP/reference	0.87163	0.214
41DAP/reference	0.90766	0.218
42DAP/reference	0.71268	0.067
43DAP/reference	0.94699	0.43
47DAP/reference	0.94462	0.359
52DAP/reference	0.8868	0.078
57DAP/reference	0.77783	0.079

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.14823	0.347
17DAP/reference	1.02588	0.924
27DAP/reference	1.40629	0.034
39DAP/reference	1.15552	0.053
41DAP/reference	1.143	0.425
42DAP/reference	1.29919	0.032
43DAP/reference	1.00954	0.66
47DAP/reference	0.91336	0.191
52DAP/reference	1.21572	0.384
57DAP/reference	0.8902	0.225

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.97785	1
26DAP/20DAP	1.19717	0.778
34DAP/26DAP	0.99853	0.944
51DAP/34DAP	0.88822	0.466
52DAP/51DAP	1.96015
53DAP/52DAP	0.96523	0.854
55DAP/53DAP	1.39341	0.504
57DAP/55DAP	0.88361	0.56
62DAP/57DAP	0.98026	0.994
68DAP/62DAP	0.8557	0.722
68DAP/14DAP	1.27107	0.656

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.57742

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.52988	0.411
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	1.23623
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	0.95399
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	0.97982
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.99651	1
IL2-6/WTpooled	1.16177	0.584
IL7-5/WTpooled	0.64679	1
IL7-3/WTpooled	1.06114	1
IL12-4/WTpooled	1.09679	0.522
IL1-4/WTpooled	1.02785	1
WT/WTpooled	0.99576	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.03551	0.921
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.11777	1
DC3000/delta hrp 24h	0.99475	1

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.83696	0.457
Var 12h I row2-row1	1.09004	0.406
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	0.29764	1
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	0.95296	1
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	1.98935	0.852
Time course 12hI-12hNI	0.5654	1
Time course 36hI-36hNI	0.70304	0.26
Time course 60hI-60hNI	1.09878

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	19.5874	1
transgenic ySAMdc/azygous control (breaker)	1.50383	1
transgenic ySAMdc/azygous control (red)	1.85482	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.96761	0.186

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.79292	0.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.72307	1
Manapal/WT (break)	1.15599	1
Manapal/WT (red)	N/A	N/A