Expression of 1-1-5.4.19.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.892350.511
27DAP/17DAP0.822530.532
39DAP/27DAP0.91320.608
41DAP/39DAP1.003640.911
42DAP/41DAP1.106190.949
43DAP/42DAP1.170420.991
47DAP/43DAP1.30790.481
52DAP/47DAP1.086390.758
57DAP/52DAP1.091850.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.93470.465
17DAP/reference1.233560.631
27DAP/reference1.361570.009
39DAP/reference1.598370.022
41DAP/reference1.543340.48
42DAP/reference0.995450.425
43DAP/reference1.33981
47DAP/reference1.035161
52DAP/reference1.212410.476
57DAP/reference0.67697

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.977710.716
27DAP/17DAP1.202060.245
39DAP/27DAP0.99471
41DAP/39DAP1.008981
42DAP/41DAP0.954970.62
43DAP/42DAP1.100350.446
47DAP/43DAP0.980320.902
52DAP/47DAP1.020040.945
57DAP/52DAP0.915150.473
57DAP/7DAP1.062751

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.042531
17DAP/reference1.053830.688
27DAP/reference1.322080.073
39DAP/reference1.889650.186
41DAP/reference1.643970.03
42DAP/reference1.464080.009
43DAP/reference1.212360.111
47DAP/reference1.138190.618
52DAP/reference1.182980.121
57DAP/reference1.197670.087

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.032460.869
17DAP/reference1.057590.892
27DAP/reference0.867640.195
39DAP/reference0.928870.359
41DAP/reference0.972720.459
42DAP/reference1.187830.476
43DAP/reference0.954210.486
47DAP/reference1.135640.311
52DAP/reference1.118790.168
57DAP/reference1.173550.334

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.333490.018
17DAP/reference1.064560.665
27DAP/reference1.226480.149
39DAP/reference1.140210.134
41DAP/reference1.096640.657
42DAP/reference1.271720.074
43DAP/reference1.254760.183
47DAP/reference0.932750.335
52DAP/reference1.389960.136
57DAP/reference1.142490.16

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.998471
26DAP/20DAP0.830710.244
34DAP/26DAP0.922340.811
51DAP/34DAP0.843130.18
52DAP/51DAP1.229190.146
53DAP/52DAP1.020350.91
55DAP/53DAP1.172670.634
57DAP/55DAP1.159340.364
62DAP/57DAP1.211460.767
68DAP/62DAP0.904040.747
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.773080.102

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato4.236820.023
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato3.62214
Mature Eggplant/Ripe Tomato2.3638

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.021681
1-1-2/M820.862540.804
12-2/M820.993191
12-4/M821.13546
1-3/M820.81517
2-1-1/M821.14780.689
2-1/M82N/AN/A
2-6/M821.162150.452
3-2/M820.95593
4-1-1/M821.065951
4-1/M82N/AN/A
4-3-2/M821.12687
4-3/M820.81763
5-3/M820.964411
6-2/M820.99749
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.04991
9-3-2/M820.91425

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.938650.321
IL2-6/WTpooled0.77320.473
IL7-5/WTpooled0.683431
IL7-3/WTpooled0.638720.298
IL12-4/WTpooled1.055850.785
IL1-4/WTpooled0.991591
WT/WTpooled1.012341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.845670.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.911760.941
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.045110.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.799740.037
DC3000 delta B/DC3000 delta AB0.859010.055

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.060771
Var 0h0.373151
Var 12h I row2-row10.871380.357
Var 12h NI row2-row11.013271
Var 36h I row2-row10.97091
Var 36h NI row2-row11.141830.253
Var 60h I row2-row10.948540.952
Var 60h NI row2-row11.058711
Time course 0hI-0hNI0.996851
Time course 12hI-12hNI0.931790.357
Time course 36hI-36hNI0.897510.089
Time course 60hI-60hNI0.395160.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.836271

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.935290.305

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.251060.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)2.342460.222