Expression of 1-1-5.4.19.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02403 | 0.997 |
27DAP/17DAP | 1.62839 | 0.625 |
39DAP/27DAP | 1.42827 | 0.236 |
41DAP/39DAP | 1.18918 | 0.765 |
42DAP/41DAP | 2.6413 | 0.047 |
43DAP/42DAP | 1.53543 | 0.829 |
47DAP/43DAP | 1.2368 | 0.856 |
52DAP/47DAP | 0.77762 | 0.459 |
57DAP/52DAP | 1.46419 | 0.908 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08705 | 0.384 |
17DAP/reference | 1.0887 | 0.161 |
27DAP/reference | 1.04919 | 0.623 |
39DAP/reference | 1.0976 | 0.108 |
41DAP/reference | 1.21408 | 0.013 |
42DAP/reference | 1.41968 | 0.001 |
43DAP/reference | 1.43375 | 0.014 |
47DAP/reference | 1.70276 | 0.001 |
52DAP/reference | 1.63123 | 0.008 |
57DAP/reference | 1.25411 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94596 | 0.509 |
27DAP/17DAP | 1.03148 | 0.909 |
39DAP/27DAP | 0.97985 | 0.898 |
41DAP/39DAP | 1.0796 | 0.868 |
42DAP/41DAP | 1.12807 | 0.208 |
43DAP/42DAP | 1.22098 | 0.056 |
47DAP/43DAP | 1.01654 | 0.973 |
52DAP/47DAP | 1.25947 | 0.366 |
57DAP/52DAP | 1.18226 | 0.311 |
57DAP/7DAP | 1.19613 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85827 | 0.122 |
17DAP/reference | 0.70318 | 0.072 |
27DAP/reference | 0.82685 | 0.125 |
39DAP/reference | 0.7317 | 0.039 |
41DAP/reference | 0.79932 | 0.107 |
42DAP/reference | 0.95165 | 0.554 |
43DAP/reference | 1.00811 | 0.694 |
47DAP/reference | 1.07575 | 1 |
52DAP/reference | 1.94783 | 0.832 |
57DAP/reference | 0.83744 | 0.042 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03531 | 0.776 |
17DAP/reference | 1.1405 | 0.203 |
27DAP/reference | 1.17868 | 0.331 |
39DAP/reference | 1.20347 | 0.188 |
41DAP/reference | 1.4343 | 0.027 |
42DAP/reference | 1.26502 | 0.012 |
43DAP/reference | 0.9114 | 0.328 |
47DAP/reference | 1.23823 | 0.015 |
52DAP/reference | 1.2112 | 0.032 |
57DAP/reference | 1.25809 | 0.018 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7863 | 0.112 |
17DAP/reference | 0.9527 | 0.592 |
27DAP/reference | 0.90335 | 0.416 |
39DAP/reference | 6.55182 | 0.512 |
41DAP/reference | 1.21757 | 0.333 |
42DAP/reference | 1.53749 | 0.265 |
43DAP/reference | 1.76848 | 0.139 |
47DAP/reference | 1.96699 | 0.008 |
52DAP/reference | 1.16501 | 0.664 |
57DAP/reference | 1.70834 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92594 | 1 |
26DAP/20DAP | 1.18583 | 0.778 |
34DAP/26DAP | 1.58334 | 0.819 |
51DAP/34DAP | 1.11655 | 0.854 |
52DAP/51DAP | 1.76434 | 0.035 |
53DAP/52DAP | 0.84774 | 0.068 |
55DAP/53DAP | 1.34707 | 0.076 |
57DAP/55DAP | 0.7598 | 0.125 |
62DAP/57DAP | 0.53326 | 0.028 |
68DAP/62DAP | 1.34708 | 0.7 |
68DAP/14DAP | 0.92718 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.83139 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.54444 | 0.118 |
Mature Green Tomato/Ripe Tomato | 0.23097 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.33087 | 0.13 |
Ripe Pepper/Ripe Tomato | 0.32619 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.1941 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.37545 | 1 |
1-1-2/M82 | 1.51372 | 1 |
12-2/M82 | 1.19548 | 1 |
12-4/M82 | 1.93152 | 1 |
1-3/M82 | 2.22328 | |
2-1-1/M82 | 0.90711 | |
2-1/M82 | 0.54242 | |
2-6/M82 | 0.72768 | 0.501 |
3-2/M82 | 0.32139 | |
4-1-1/M82 | 0.68175 | 0.926 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.22914 | 1 |
4-3/M82 | 1.96875 | |
5-3/M82 | 1.22358 | 0.572 |
6-2/M82 | 1.60026 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.07158 | 1 |
9-3-2/M82 | 1.27694 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90555 | 0.321 |
IL2-6/WTpooled | 0.73433 | 0.473 |
IL7-5/WTpooled | 0.9837 | 1 |
IL7-3/WTpooled | 1.11805 | 1 |
IL12-4/WTpooled | 0.89783 | 0.71 |
IL1-4/WTpooled | 0.86539 | 0.562 |
WT/WTpooled | 1.03316 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0275 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95327 | 0.849 |
DC3000/delta hrp 6h | 1.00615 | 0.95 |
DC3000/delta hrp 12h | 1.17358 | 1 |
DC3000/delta hrp 24h | 0.72212 | 0.041 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.22189 | 0.094 |
DC3000 delta B/DC3000 delta AB | 1.32607 | 0.159 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98755 | 1 |
Exp 36h | 0.92812 | 0.82 |
Exp 60h | 1.21835 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01556 | 1 |
Var 0h | 0.90834 | 0.457 |
Var 12h I row2-row1 | 0.86118 | 0.344 |
Var 12h NI row2-row1 | 1.12935 | 0.649 |
Var 36h I row2-row1 | 1.20358 | 0.368 |
Var 36h NI row2-row1 | 2.13274 | 1 |
Var 60h I row2-row1 | 0.86084 | 0.306 |
Var 60h NI row2-row1 | 0.9358 | 0.932 |
Time course 0hI-0hNI | 0.96341 | 0.755 |
Time course 12hI-12hNI | 1.03499 | 0.762 |
Time course 36hI-36hNI | 1.08943 | 0.316 |
Time course 60hI-60hNI | 1.60553 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96102 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 0.79757 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.95029 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96118 | 0.104 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.10546 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.54397 | 0.084 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.47275 | 0.164 |
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