Expression of 1-1-5.4.19.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.024030.997
27DAP/17DAP1.628390.625
39DAP/27DAP1.428270.236
41DAP/39DAP1.189180.765
42DAP/41DAP2.64130.047
43DAP/42DAP1.535430.829
47DAP/43DAP1.23680.856
52DAP/47DAP0.777620.459
57DAP/52DAP1.464190.908

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.087050.384
17DAP/reference1.08870.161
27DAP/reference1.049190.623
39DAP/reference1.09760.108
41DAP/reference1.214080.013
42DAP/reference1.419680.001
43DAP/reference1.433750.014
47DAP/reference1.702760.001
52DAP/reference1.631230.008
57DAP/reference1.254110.038

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.945960.509
27DAP/17DAP1.031480.909
39DAP/27DAP0.979850.898
41DAP/39DAP1.07960.868
42DAP/41DAP1.128070.208
43DAP/42DAP1.220980.056
47DAP/43DAP1.016540.973
52DAP/47DAP1.259470.366
57DAP/52DAP1.182260.311
57DAP/7DAP1.196131

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.858270.122
17DAP/reference0.703180.072
27DAP/reference0.826850.125
39DAP/reference0.73170.039
41DAP/reference0.799320.107
42DAP/reference0.951650.554
43DAP/reference1.008110.694
47DAP/reference1.075751
52DAP/reference1.947830.832
57DAP/reference0.837440.042

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.035310.776
17DAP/reference1.14050.203
27DAP/reference1.178680.331
39DAP/reference1.203470.188
41DAP/reference1.43430.027
42DAP/reference1.265020.012
43DAP/reference0.91140.328
47DAP/reference1.238230.015
52DAP/reference1.21120.032
57DAP/reference1.258090.018

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.78630.112
17DAP/reference0.95270.592
27DAP/reference0.903350.416
39DAP/reference6.551820.512
41DAP/reference1.217570.333
42DAP/reference1.537490.265
43DAP/reference1.768480.139
47DAP/reference1.966990.008
52DAP/reference1.165010.664
57DAP/reference1.708340.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.925941
26DAP/20DAP1.185830.778
34DAP/26DAP1.583340.819
51DAP/34DAP1.116550.854
52DAP/51DAP1.764340.035
53DAP/52DAP0.847740.068
55DAP/53DAP1.347070.076
57DAP/55DAP0.75980.125
62DAP/57DAP0.533260.028
68DAP/62DAP1.347080.7
68DAP/14DAP0.927181

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.831390.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.544440.118
Mature Green Tomato/Ripe Tomato0.230970.017
Immature Eggplant/Mature Eggplant1.330870.13
Ripe Pepper/Ripe Tomato0.326190.224
Mature Eggplant/Ripe Tomato0.19410.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.375451
1-1-2/M821.513721
12-2/M821.195481
12-4/M821.931521
1-3/M822.22328
2-1-1/M820.90711
2-1/M820.54242
2-6/M820.727680.501
3-2/M820.32139
4-1-1/M820.681750.926
4-1/M82N/AN/A
4-3-2/M821.229141
4-3/M821.96875
5-3/M821.223580.572
6-2/M821.60026
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.071581
9-3-2/M821.276941

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.905550.321
IL2-6/WTpooled0.734330.473
IL7-5/WTpooled0.98371
IL7-3/WTpooled1.118051
IL12-4/WTpooled0.897830.71
IL1-4/WTpooled0.865390.562
WT/WTpooled1.033161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.02751

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.953270.849
DC3000/delta hrp 6h1.006150.95
DC3000/delta hrp 12h1.173581
DC3000/delta hrp 24h0.722120.041

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.221890.094
DC3000 delta B/DC3000 delta AB1.326070.159

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.987551
Exp 36h0.928120.82
Exp 60h1.218351

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.015561
Var 0h0.908340.457
Var 12h I row2-row10.861180.344
Var 12h NI row2-row11.129350.649
Var 36h I row2-row11.203580.368
Var 36h NI row2-row12.132741
Var 60h I row2-row10.860840.306
Var 60h NI row2-row10.93580.932
Time course 0hI-0hNI0.963410.755
Time course 12hI-12hNI1.034990.762
Time course 36hI-36hNI1.089430.316
Time course 60hI-60hNI1.605530.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.961020.662
transgenic ySAMdc/azygous control (breaker)0.797570.251
transgenic ySAMdc/azygous control (red)0.950291

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.961180.104

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.105460.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.543970.084
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.472750.164