Expression of 1-1-5.4.19.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85733 | 0.29 |
27DAP/17DAP | 1.07048 | 0.871 |
39DAP/27DAP | 1.32998 | 0.692 |
41DAP/39DAP | 1.39594 | 0.765 |
42DAP/41DAP | 1.02316 | 1 |
43DAP/42DAP | 1.09105 | 1 |
47DAP/43DAP | 0.94633 | 0.754 |
52DAP/47DAP | 1.27069 | 0.398 |
57DAP/52DAP | 1.04458 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.009 | 1 |
17DAP/reference | 0.94142 | 0.26 |
27DAP/reference | 0.95721 | 0.428 |
39DAP/reference | 0.99765 | 0.957 |
41DAP/reference | 1.04509 | 0.451 |
42DAP/reference | 1.04808 | 0.219 |
43DAP/reference | 0.96196 | 0.259 |
47DAP/reference | 0.98837 | 0.473 |
52DAP/reference | 1.08617 | 0.371 |
57DAP/reference | 0.94184 | 0.21 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93074 | 0.454 |
27DAP/17DAP | 1.02518 | 0.96 |
39DAP/27DAP | 1.11997 | 0.505 |
41DAP/39DAP | 1.00772 | 1 |
42DAP/41DAP | 1.08709 | 0.401 |
43DAP/42DAP | 1.00819 | 1 |
47DAP/43DAP | 1.02995 | 0.934 |
52DAP/47DAP | 1.01344 | 1 |
57DAP/52DAP | 1.01012 | 1 |
57DAP/7DAP | 1.07088 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91511 | 0.066 |
17DAP/reference | 0.9616 | 0.039 |
27DAP/reference | 0.99364 | 0.656 |
39DAP/reference | 0.97776 | 0.354 |
41DAP/reference | 0.84476 | 0.042 |
42DAP/reference | 0.80487 | 0.01 |
43DAP/reference | 0.87398 | 0.126 |
47DAP/reference | 0.98067 | 0.671 |
52DAP/reference | 0.91889 | 0.254 |
57DAP/reference | 0.91831 | 0.223 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06268 | 0.384 |
17DAP/reference | 1.05424 | 0.33 |
27DAP/reference | 1.0725 | 0.516 |
39DAP/reference | 1.04068 | 0.891 |
41DAP/reference | 0.97204 | 0.432 |
42DAP/reference | 1.01521 | 1 |
43DAP/reference | 1.10244 | 0.119 |
47DAP/reference | 0.98329 | 0.512 |
52DAP/reference | 1.05647 | 0.208 |
57DAP/reference | 1.09731 | 0.123 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01145 | 0.775 |
17DAP/reference | 1.0374 | 0.638 |
27DAP/reference | 0.96136 | 0.243 |
39DAP/reference | 0.98649 | 0.544 |
41DAP/reference | 0.94081 | 0.086 |
42DAP/reference | 0.99704 | 1 |
43DAP/reference | 1.03733 | 0.815 |
47DAP/reference | 0.99867 | 0.687 |
52DAP/reference | 1.04935 | 0.694 |
57DAP/reference | 0.95086 | 0.366 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97552 | 1 |
26DAP/20DAP | 0.94632 | 1 |
34DAP/26DAP | 0.96977 | 0.917 |
51DAP/34DAP | 0.97742 | 0.807 |
52DAP/51DAP | 1.03884 | 0.708 |
53DAP/52DAP | 0.97237 | 0.868 |
55DAP/53DAP | 1.06659 | 0.719 |
57DAP/55DAP | 0.95898 | 0.804 |
62DAP/57DAP | 0.99114 | 0.994 |
68DAP/62DAP | 0.88911 | 0.464 |
68DAP/14DAP | 1.06426 | 0.558 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.99313 | 0.696 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.83311 | 0.309 |
Mature Green Tomato/Ripe Tomato | 0.85084 | 0.522 |
Immature Eggplant/Mature Eggplant | 1.00963 | 1 |
Ripe Pepper/Ripe Tomato | 9.3694 | 1 |
Mature Eggplant/Ripe Tomato | 7.66524 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.90572 | 0.944 |
1-1-2/M82 | 0.70686 | |
12-2/M82 | 0.91318 | 0.955 |
12-4/M82 | 1.04655 | 1 |
1-3/M82 | 0.75294 | 0.501 |
2-1-1/M82 | 1.89293 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.08588 | 0.505 |
3-2/M82 | 1.37748 | 0.84 |
4-1-1/M82 | 1.25414 | 1 |
4-1/M82 | 0.9728 | 1 |
4-3-2/M82 | 0.86994 | 1 |
4-3/M82 | 2.58483 | |
5-3/M82 | 1.0376 | 1 |
6-2/M82 | 1.67218 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.42921 | |
7-2/M82 | 1.14981 | 1 |
9-3-2/M82 | 0.69348 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.23915 | 0.277 |
IL2-6/WTpooled | 1.12125 | |
IL7-5/WTpooled | 1.2154 | 0.792 |
IL7-3/WTpooled | 0.93333 | |
IL12-4/WTpooled | 0.97529 | 1 |
IL1-4/WTpooled | 1.05462 | 1 |
WT/WTpooled | 0.99474 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07282 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03255 | 1 |
DC3000/delta hrp 6h | 1.05117 | 1 |
DC3000/delta hrp 12h | 0.96872 | 1 |
DC3000/delta hrp 24h | 1.15477 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95974 | 0.341 |
DC3000 delta B/DC3000 delta AB | 1.06186 | 0.484 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.92627 | 1 |
Exp 36h | 1.05644 | 1 |
Exp 60h | 0.95182 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98501 | 1 |
Var 0h | 1.0759 | 1 |
Var 12h I row2-row1 | 1.10559 | 0.263 |
Var 12h NI row2-row1 | 0.9926 | 1 |
Var 36h I row2-row1 | 1.04492 | 1 |
Var 36h NI row2-row1 | 1.09966 | 1 |
Var 60h I row2-row1 | 0.69218 | 0.366 |
Var 60h NI row2-row1 | 1.23201 | 0.904 |
Time course 0hI-0hNI | 1.05725 | 0.833 |
Time course 12hI-12hNI | 0.98823 | 0.956 |
Time course 36hI-36hNI | 0.91993 | 0.068 |
Time course 60hI-60hNI | 1.39955 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02907 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.82808 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.09281 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01009 | 0.619 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81144 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.49178 | 0.084 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 3.12368 | 0.133 |
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