Expression of 1-1-5.4.19.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.857330.29
27DAP/17DAP1.070480.871
39DAP/27DAP1.329980.692
41DAP/39DAP1.395940.765
42DAP/41DAP1.023161
43DAP/42DAP1.091051
47DAP/43DAP0.946330.754
52DAP/47DAP1.270690.398
57DAP/52DAP1.044580.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.0091
17DAP/reference0.941420.26
27DAP/reference0.957210.428
39DAP/reference0.997650.957
41DAP/reference1.045090.451
42DAP/reference1.048080.219
43DAP/reference0.961960.259
47DAP/reference0.988370.473
52DAP/reference1.086170.371
57DAP/reference0.941840.21

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.930740.454
27DAP/17DAP1.025180.96
39DAP/27DAP1.119970.505
41DAP/39DAP1.007721
42DAP/41DAP1.087090.401
43DAP/42DAP1.008191
47DAP/43DAP1.029950.934
52DAP/47DAP1.013441
57DAP/52DAP1.010121
57DAP/7DAP1.070881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.915110.066
17DAP/reference0.96160.039
27DAP/reference0.993640.656
39DAP/reference0.977760.354
41DAP/reference0.844760.042
42DAP/reference0.804870.01
43DAP/reference0.873980.126
47DAP/reference0.980670.671
52DAP/reference0.918890.254
57DAP/reference0.918310.223

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.062680.384
17DAP/reference1.054240.33
27DAP/reference1.07250.516
39DAP/reference1.040680.891
41DAP/reference0.972040.432
42DAP/reference1.015211
43DAP/reference1.102440.119
47DAP/reference0.983290.512
52DAP/reference1.056470.208
57DAP/reference1.097310.123

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.011450.775
17DAP/reference1.03740.638
27DAP/reference0.961360.243
39DAP/reference0.986490.544
41DAP/reference0.940810.086
42DAP/reference0.997041
43DAP/reference1.037330.815
47DAP/reference0.998670.687
52DAP/reference1.049350.694
57DAP/reference0.950860.366

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.975521
26DAP/20DAP0.946321
34DAP/26DAP0.969770.917
51DAP/34DAP0.977420.807
52DAP/51DAP1.038840.708
53DAP/52DAP0.972370.868
55DAP/53DAP1.066590.719
57DAP/55DAP0.958980.804
62DAP/57DAP0.991140.994
68DAP/62DAP0.889110.464
68DAP/14DAP1.064260.558

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.993130.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.833110.309
Mature Green Tomato/Ripe Tomato0.850840.522
Immature Eggplant/Mature Eggplant1.009631
Ripe Pepper/Ripe Tomato9.36941
Mature Eggplant/Ripe Tomato7.665240.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.905720.944
1-1-2/M820.70686
12-2/M820.913180.955
12-4/M821.046551
1-3/M820.752940.501
2-1-1/M821.89293
2-1/M82N/AN/A
2-6/M821.085880.505
3-2/M821.377480.84
4-1-1/M821.254141
4-1/M820.97281
4-3-2/M820.869941
4-3/M822.58483
5-3/M821.03761
6-2/M821.67218
6-3/M82N/AN/A
7-1/M821.42921
7-2/M821.149811
9-3-2/M820.693480.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.239150.277
IL2-6/WTpooled1.12125
IL7-5/WTpooled1.21540.792
IL7-3/WTpooled0.93333
IL12-4/WTpooled0.975291
IL1-4/WTpooled1.054621
WT/WTpooled0.994741

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.072821

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.032551
DC3000/delta hrp 6h1.051171
DC3000/delta hrp 12h0.968721
DC3000/delta hrp 24h1.154770.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.959740.341
DC3000 delta B/DC3000 delta AB1.061860.484

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.926271
Exp 36h1.056441
Exp 60h0.951820.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.985011
Var 0h1.07591
Var 12h I row2-row11.105590.263
Var 12h NI row2-row10.99261
Var 36h I row2-row11.044921
Var 36h NI row2-row11.099661
Var 60h I row2-row10.692180.366
Var 60h NI row2-row11.232010.904
Time course 0hI-0hNI1.057250.833
Time course 12hI-12hNI0.988230.956
Time course 36hI-36hNI0.919930.068
Time course 60hI-60hNI1.399550.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.029070.798
transgenic ySAMdc/azygous control (breaker)0.828080.49
transgenic ySAMdc/azygous control (red)1.092810.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.010090.619

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.811440.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.491780.084
Manapal/WT (break)N/AN/A
Manapal/WT (red)3.123680.133