Expression of 1-1-5.4.19.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.460880.477
27DAP/17DAP1.851980.613
39DAP/27DAP4.18950.262
41DAP/39DAP1.271640.822
42DAP/41DAP1.488320.066
43DAP/42DAP0.82530.7
47DAP/43DAP0.929070.716
52DAP/47DAP0.891270.681
57DAP/52DAP1.747020.55

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.923180.217
17DAP/reference0.808140.012
27DAP/reference0.866030.016
39DAP/reference0.966640.6
41DAP/reference0.993170.814
42DAP/reference0.985820.398
43DAP/reference0.906610.129
47DAP/reference0.877740.148
52DAP/reference1.133630.286
57DAP/reference1.14280.047

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.986980.763
27DAP/17DAP1.047730.915
39DAP/27DAP1.622360.114
41DAP/39DAP1.673040.018
42DAP/41DAP0.954930.666
43DAP/42DAP0.832580.022
47DAP/43DAP1.321630.276
52DAP/47DAP0.93750.753
57DAP/52DAP0.930820.591
57DAP/7DAP1.401921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.039560.894
17DAP/reference0.920660.144
27DAP/reference1.005080.748
39DAP/reference0.985850.552
41DAP/reference0.918540.298
42DAP/reference0.995640.641
43DAP/reference1.172590.256
47DAP/reference1.145640.458
52DAP/reference1.497210.029
57DAP/reference1.890530.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.925320.412
17DAP/reference0.805250.005
27DAP/reference0.862220.051
39DAP/reference0.944260.274
41DAP/reference0.942440.315
42DAP/reference1.031550.759
43DAP/reference0.987850.62
47DAP/reference0.949710.27
52DAP/reference0.979390.469
57DAP/reference0.8640.024

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.970750.422
17DAP/reference0.941060.47
27DAP/reference0.920020.302
39DAP/reference0.914010.101
41DAP/reference1.10340.714
42DAP/reference0.916720.361
43DAP/reference1.048051
47DAP/reference0.992940.626
52DAP/reference0.875260.368
57DAP/reference1.17560.041

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.13541
26DAP/20DAP0.883090.512
34DAP/26DAP1.047261
51DAP/34DAP0.828130.341
52DAP/51DAP1.023250.915
53DAP/52DAP1.073450.565
55DAP/53DAP1.160010.429
57DAP/55DAP0.879220.398
62DAP/57DAP1.169230.445
68DAP/62DAP1.147660.597
68DAP/14DAP1.683970.03

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.303590.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.30224
Mature Green Tomato/Ripe Tomato0.759620.096
Immature Eggplant/Mature Eggplant5.89015
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.6422
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.23525
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.32012
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.24671
7-2/M82N/AN/A
9-3-2/M820.424760.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.055271
IL2-6/WTpooled1.297860.419
IL7-5/WTpooled1.342671
IL7-3/WTpooled0.950271
IL12-4/WTpooled1.188030.52
IL1-4/WTpooled1.120711
WT/WTpooled0.957671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.089261

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.147910.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.927131
DC3000/delta hrp 24h1.012610.662

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.662950.024
DC3000 delta B/DC3000 delta AB0.642780.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.007621
Exp 36hN/AN/A
Exp 60h1.560270.215

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980541
Var 0h1.336560.98
Var 12h I row2-row10.827160.514
Var 12h NI row2-row11.033171
Var 36h I row2-row11.116590.908
Var 36h NI row2-row11.021521
Var 60h I row2-row11.118791
Var 60h NI row2-row10.973271
Time course 0hI-0hNI1.067250.833
Time course 12hI-12hNI0.980350.836
Time course 36hI-36hNI1.332960.006
Time course 60hI-60hNI0.863510.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.388710.862
transgenic ySAMdc/azygous control (breaker)1.49361
transgenic ySAMdc/azygous control (red)1.589990.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.99060.712

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.653720.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.899881
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.346720.222