Expression of 1-1-5.4.19.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.46088 | 0.477 |
27DAP/17DAP | 1.85198 | 0.613 |
39DAP/27DAP | 4.1895 | 0.262 |
41DAP/39DAP | 1.27164 | 0.822 |
42DAP/41DAP | 1.48832 | 0.066 |
43DAP/42DAP | 0.8253 | 0.7 |
47DAP/43DAP | 0.92907 | 0.716 |
52DAP/47DAP | 0.89127 | 0.681 |
57DAP/52DAP | 1.74702 | 0.55 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92318 | 0.217 |
17DAP/reference | 0.80814 | 0.012 |
27DAP/reference | 0.86603 | 0.016 |
39DAP/reference | 0.96664 | 0.6 |
41DAP/reference | 0.99317 | 0.814 |
42DAP/reference | 0.98582 | 0.398 |
43DAP/reference | 0.90661 | 0.129 |
47DAP/reference | 0.87774 | 0.148 |
52DAP/reference | 1.13363 | 0.286 |
57DAP/reference | 1.1428 | 0.047 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98698 | 0.763 |
27DAP/17DAP | 1.04773 | 0.915 |
39DAP/27DAP | 1.62236 | 0.114 |
41DAP/39DAP | 1.67304 | 0.018 |
42DAP/41DAP | 0.95493 | 0.666 |
43DAP/42DAP | 0.83258 | 0.022 |
47DAP/43DAP | 1.32163 | 0.276 |
52DAP/47DAP | 0.9375 | 0.753 |
57DAP/52DAP | 0.93082 | 0.591 |
57DAP/7DAP | 1.40192 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03956 | 0.894 |
17DAP/reference | 0.92066 | 0.144 |
27DAP/reference | 1.00508 | 0.748 |
39DAP/reference | 0.98585 | 0.552 |
41DAP/reference | 0.91854 | 0.298 |
42DAP/reference | 0.99564 | 0.641 |
43DAP/reference | 1.17259 | 0.256 |
47DAP/reference | 1.14564 | 0.458 |
52DAP/reference | 1.49721 | 0.029 |
57DAP/reference | 1.89053 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92532 | 0.412 |
17DAP/reference | 0.80525 | 0.005 |
27DAP/reference | 0.86222 | 0.051 |
39DAP/reference | 0.94426 | 0.274 |
41DAP/reference | 0.94244 | 0.315 |
42DAP/reference | 1.03155 | 0.759 |
43DAP/reference | 0.98785 | 0.62 |
47DAP/reference | 0.94971 | 0.27 |
52DAP/reference | 0.97939 | 0.469 |
57DAP/reference | 0.864 | 0.024 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97075 | 0.422 |
17DAP/reference | 0.94106 | 0.47 |
27DAP/reference | 0.92002 | 0.302 |
39DAP/reference | 0.91401 | 0.101 |
41DAP/reference | 1.1034 | 0.714 |
42DAP/reference | 0.91672 | 0.361 |
43DAP/reference | 1.04805 | 1 |
47DAP/reference | 0.99294 | 0.626 |
52DAP/reference | 0.87526 | 0.368 |
57DAP/reference | 1.1756 | 0.041 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1354 | 1 |
26DAP/20DAP | 0.88309 | 0.512 |
34DAP/26DAP | 1.04726 | 1 |
51DAP/34DAP | 0.82813 | 0.341 |
52DAP/51DAP | 1.02325 | 0.915 |
53DAP/52DAP | 1.07345 | 0.565 |
55DAP/53DAP | 1.16001 | 0.429 |
57DAP/55DAP | 0.87922 | 0.398 |
62DAP/57DAP | 1.16923 | 0.445 |
68DAP/62DAP | 1.14766 | 0.597 |
68DAP/14DAP | 1.68397 | 0.03 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.30359 | 0.018 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.30224 | |
Mature Green Tomato/Ripe Tomato | 0.75962 | 0.096 |
Immature Eggplant/Mature Eggplant | 5.89015 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.6422 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.23525 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.32012 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.24671 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.42476 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05527 | 1 |
IL2-6/WTpooled | 1.29786 | 0.419 |
IL7-5/WTpooled | 1.34267 | 1 |
IL7-3/WTpooled | 0.95027 | 1 |
IL12-4/WTpooled | 1.18803 | 0.52 |
IL1-4/WTpooled | 1.12071 | 1 |
WT/WTpooled | 0.95767 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08926 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.14791 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.92713 | 1 |
DC3000/delta hrp 24h | 1.01261 | 0.662 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.66295 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.64278 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00762 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.56027 | 0.215 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98054 | 1 |
Var 0h | 1.33656 | 0.98 |
Var 12h I row2-row1 | 0.82716 | 0.514 |
Var 12h NI row2-row1 | 1.03317 | 1 |
Var 36h I row2-row1 | 1.11659 | 0.908 |
Var 36h NI row2-row1 | 1.02152 | 1 |
Var 60h I row2-row1 | 1.11879 | 1 |
Var 60h NI row2-row1 | 0.97327 | 1 |
Time course 0hI-0hNI | 1.06725 | 0.833 |
Time course 12hI-12hNI | 0.98035 | 0.836 |
Time course 36hI-36hNI | 1.33296 | 0.006 |
Time course 60hI-60hNI | 0.86351 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.38871 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.4936 | 1 |
transgenic ySAMdc/azygous control (red) | 1.58999 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9906 | 0.712 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.65372 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89988 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.34672 | 0.222 |
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