Expression of 1-1-5.4.19.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99789 | 0.911 |
27DAP/17DAP | 1.01466 | 1 |
39DAP/27DAP | 1.06793 | 1 |
41DAP/39DAP | 1.11199 | 0.575 |
42DAP/41DAP | 1.25391 | 0.719 |
43DAP/42DAP | 0.95983 | 0.91 |
47DAP/43DAP | 0.87972 | 0.584 |
52DAP/47DAP | 1.00025 | 0.938 |
57DAP/52DAP | 0.98911 | 0.982 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40651 | 0.017 |
17DAP/reference | 1.33799 | 0.037 |
27DAP/reference | 1.24144 | 0.161 |
39DAP/reference | 1.4137 | 0.062 |
41DAP/reference | 1.84312 | 0.013 |
42DAP/reference | 1.44728 | 0.001 |
43DAP/reference | 1.05284 | 0.787 |
47DAP/reference | 1.13081 | 0.075 |
52DAP/reference | 1.30233 | 0.141 |
57DAP/reference | 1.11718 | 0.952 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96426 | 0.578 |
27DAP/17DAP | 0.97559 | 0.821 |
39DAP/27DAP | 1.00364 | 0.862 |
41DAP/39DAP | 1.05911 | 0.484 |
42DAP/41DAP | 0.99107 | 0.869 |
43DAP/42DAP | 0.98846 | 0.774 |
47DAP/43DAP | 1.00091 | 1 |
52DAP/47DAP | 1.07022 | 0.756 |
57DAP/52DAP | 1.01453 | 0.925 |
57DAP/7DAP | 1.02522 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95538 | 0.058 |
17DAP/reference | 1.02536 | 0.688 |
27DAP/reference | 1.07459 | 0.035 |
39DAP/reference | 1.03149 | 0.157 |
41DAP/reference | 1.05744 | 0.375 |
42DAP/reference | 0.98433 | 0.582 |
43DAP/reference | 1.06719 | 0.105 |
47DAP/reference | 1.03165 | 1 |
52DAP/reference | 0.97549 | 0.435 |
57DAP/reference | 1.01078 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41104 | 0.038 |
17DAP/reference | 1.67376 | 0.008 |
27DAP/reference | 1.34769 | 0.023 |
39DAP/reference | 1.20877 | 0.099 |
41DAP/reference | 1.33371 | 0.015 |
42DAP/reference | 1.39898 | 0.011 |
43DAP/reference | 1.36774 | 0.065 |
47DAP/reference | 1.34899 | 0.008 |
52DAP/reference | 1.4341 | 0.006 |
57DAP/reference | 1.74256 | 0.011 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00853 | 1 |
17DAP/reference | 1.09279 | 0.462 |
27DAP/reference | 1.13287 | 0.041 |
39DAP/reference | 1.10999 | 0.045 |
41DAP/reference | 1.01697 | 0.754 |
42DAP/reference | 1.18355 | 0.199 |
43DAP/reference | 1.2729 | 0.076 |
47DAP/reference | 1.37781 | 0.073 |
52DAP/reference | 0.99048 | 0.838 |
57DAP/reference | 0.72219 | 0.032 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97803 | 1 |
26DAP/20DAP | 0.99888 | 1 |
34DAP/26DAP | 1.07946 | 1 |
51DAP/34DAP | 1.00775 | 0.936 |
52DAP/51DAP | 1.02533 | 0.722 |
53DAP/52DAP | 0.99116 | 0.951 |
55DAP/53DAP | 0.93571 | 0.404 |
57DAP/55DAP | 0.96708 | 0.821 |
62DAP/57DAP | 1.10302 | 1 |
68DAP/62DAP | 0.9644 | 0.769 |
68DAP/14DAP | 0.59763 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.12332 | 0.061 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.05264 | 0.523 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.09654 | |
Mature Eggplant/Ripe Tomato | 0.66712 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9552 | 0.944 |
1-1-2/M82 | 1.02811 | 1 |
12-2/M82 | 0.90409 | 0.955 |
12-4/M82 | 1.03906 | 1 |
1-3/M82 | 0.9735 | 0.501 |
2-1-1/M82 | 0.95658 | 0.784 |
2-1/M82 | 1.0073 | 1 |
2-6/M82 | 0.93604 | 1 |
3-2/M82 | 0.98448 | 1 |
4-1-1/M82 | 1.08113 | 1 |
4-1/M82 | 1.0424 | 1 |
4-3-2/M82 | 0.98106 | 0.487 |
4-3/M82 | 0.9062 | 0.72 |
5-3/M82 | 0.997 | 1 |
6-2/M82 | 1.03055 | 1 |
6-3/M82 | 1.02217 | 1 |
7-1/M82 | 1.00879 | 1 |
7-2/M82 | 0.95007 | 0.881 |
9-3-2/M82 | 1.11108 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05105 | |
IL2-6/WTpooled | 1.39786 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.83948 | 1 |
IL12-4/WTpooled | 1.14198 | 0.839 |
IL1-4/WTpooled | 1.00227 | |
WT/WTpooled | 0.92441 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.967 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04643 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.24709 | 1 |
DC3000/delta hrp 24h | 1.03185 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.27983 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.22147 | 0.151 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00539 | 1 |
Var 0h | 1.08775 | 0.98 |
Var 12h I row2-row1 | 1.15834 | 0.209 |
Var 12h NI row2-row1 | 1.02416 | 1 |
Var 36h I row2-row1 | 0.87116 | 0.805 |
Var 36h NI row2-row1 | 0.90834 | 0.478 |
Var 60h I row2-row1 | 0.92149 | 0.582 |
Var 60h NI row2-row1 | 1.00656 | 1 |
Time course 0hI-0hNI | 1.00956 | 1 |
Time course 12hI-12hNI | 0.99256 | 1 |
Time course 36hI-36hNI | 1.00802 | 0.975 |
Time course 60hI-60hNI | 1.54793 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.82578 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.81849 | 0.057 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.37038 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.46022 | 0.413 |
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