Expression of 1-1-5.4.19.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.997890.911
27DAP/17DAP1.014661
39DAP/27DAP1.067931
41DAP/39DAP1.111990.575
42DAP/41DAP1.253910.719
43DAP/42DAP0.959830.91
47DAP/43DAP0.879720.584
52DAP/47DAP1.000250.938
57DAP/52DAP0.989110.982

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.406510.017
17DAP/reference1.337990.037
27DAP/reference1.241440.161
39DAP/reference1.41370.062
41DAP/reference1.843120.013
42DAP/reference1.447280.001
43DAP/reference1.052840.787
47DAP/reference1.130810.075
52DAP/reference1.302330.141
57DAP/reference1.117180.952

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.964260.578
27DAP/17DAP0.975590.821
39DAP/27DAP1.003640.862
41DAP/39DAP1.059110.484
42DAP/41DAP0.991070.869
43DAP/42DAP0.988460.774
47DAP/43DAP1.000911
52DAP/47DAP1.070220.756
57DAP/52DAP1.014530.925
57DAP/7DAP1.025221

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.955380.058
17DAP/reference1.025360.688
27DAP/reference1.074590.035
39DAP/reference1.031490.157
41DAP/reference1.057440.375
42DAP/reference0.984330.582
43DAP/reference1.067190.105
47DAP/reference1.031651
52DAP/reference0.975490.435
57DAP/reference1.010781

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.411040.038
17DAP/reference1.673760.008
27DAP/reference1.347690.023
39DAP/reference1.208770.099
41DAP/reference1.333710.015
42DAP/reference1.398980.011
43DAP/reference1.367740.065
47DAP/reference1.348990.008
52DAP/reference1.43410.006
57DAP/reference1.742560.011

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.008531
17DAP/reference1.092790.462
27DAP/reference1.132870.041
39DAP/reference1.109990.045
41DAP/reference1.016970.754
42DAP/reference1.183550.199
43DAP/reference1.27290.076
47DAP/reference1.377810.073
52DAP/reference0.990480.838
57DAP/reference0.722190.032

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.978031
26DAP/20DAP0.998881
34DAP/26DAP1.079461
51DAP/34DAP1.007750.936
52DAP/51DAP1.025330.722
53DAP/52DAP0.991160.951
55DAP/53DAP0.935710.404
57DAP/55DAP0.967080.821
62DAP/57DAP1.103021
68DAP/62DAP0.96440.769
68DAP/14DAP0.597630.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.123320.061

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.052640.523
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.09654
Mature Eggplant/Ripe Tomato0.66712

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.95520.944
1-1-2/M821.028111
12-2/M820.904090.955
12-4/M821.039061
1-3/M820.97350.501
2-1-1/M820.956580.784
2-1/M821.00731
2-6/M820.936041
3-2/M820.984481
4-1-1/M821.081131
4-1/M821.04241
4-3-2/M820.981060.487
4-3/M820.90620.72
5-3/M820.9971
6-2/M821.030551
6-3/M821.022171
7-1/M821.008791
7-2/M820.950070.881
9-3-2/M821.111081

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.05105
IL2-6/WTpooled1.397860.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.839481
IL12-4/WTpooled1.141980.839
IL1-4/WTpooled1.00227
WT/WTpooled0.924411

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.9671

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.046430.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.247091
DC3000/delta hrp 24h1.031850.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.279830.042
DC3000 delta B/DC3000 delta AB1.221470.151

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.005391
Var 0h1.087750.98
Var 12h I row2-row11.158340.209
Var 12h NI row2-row11.024161
Var 36h I row2-row10.871160.805
Var 36h NI row2-row10.908340.478
Var 60h I row2-row10.921490.582
Var 60h NI row2-row11.006561
Time course 0hI-0hNI1.009561
Time course 12hI-12hNI0.992561
Time course 36hI-36hNI1.008020.975
Time course 60hI-60hNI1.547930.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.825781

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.818490.057

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.370380.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.460220.413