Expression of 1-1-5.4.2.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.767020.067
27DAP/17DAP0.724710.293
39DAP/27DAP0.627590.293
41DAP/39DAP0.557460.041
42DAP/41DAP0.855920.774
43DAP/42DAP1.590320.07
47DAP/43DAP0.9690.864
52DAP/47DAP0.638780.185
57DAP/52DAP0.816210.759

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.313010.105
17DAP/reference1.189230.03
27DAP/reference1.2520.02
39DAP/reference0.919670.267
41DAP/reference0.911450.267
42DAP/reference0.880220.021
43DAP/reference0.86170.084
47DAP/reference0.791420.002
52DAP/reference0.820730.024
57DAP/reference0.8110.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.974620.697
27DAP/17DAP1.02680.942
39DAP/27DAP0.575320.031
41DAP/39DAP0.568140.013
42DAP/41DAP0.972050.737
43DAP/42DAP0.928080.447
47DAP/43DAP0.81540.056
52DAP/47DAP0.898890.612
57DAP/52DAP1.114710.654
57DAP/7DAP0.285551

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.180170.024
17DAP/reference1.321290.026
27DAP/reference1.107630.301
39DAP/reference0.834440.073
41DAP/reference0.936020.166
42DAP/reference1.015320.889
43DAP/reference0.922410.202
47DAP/reference0.902860.128
52DAP/reference0.88430.115
57DAP/reference0.933550.097

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.186360.545
17DAP/reference1.323910.011
27DAP/reference1.188770.373
39DAP/reference0.760660.033
41DAP/reference1.035340.752
42DAP/reference0.908790.169
43DAP/reference0.699350.017
47DAP/reference0.793910.012
52DAP/reference0.7190.005
57DAP/reference0.675730.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.005790.015
17DAP/reference1.508680.157
27DAP/reference1.440740.02
39DAP/reference0.983910.591
41DAP/reference0.97170.512
42DAP/reference0.76580.017
43DAP/reference0.786430.043
47DAP/reference0.735560.005
52DAP/reference0.979140.663
57DAP/reference0.706940.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.066980.966
26DAP/20DAP1.165960.663
34DAP/26DAP1.030961
51DAP/34DAP1.994830.032
52DAP/51DAP0.822211
53DAP/52DAP1.541590.045
55DAP/53DAP0.901070.5
57DAP/55DAP0.862620.41
62DAP/57DAP0.747170.088
68DAP/62DAP1.113430.788
68DAP/14DAP1.529060.059

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.269850.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.577250.118
Mature Green Tomato/Ripe Tomato5.297030.015
Immature Eggplant/Mature Eggplant0.459110.057
Ripe Pepper/Ripe Tomato21.43270.258
Mature Eggplant/Ripe Tomato10.8620.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.687
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.60376
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M822.10905

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.090920.46
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.089391
IL12-4/WTpooled1.139940.595
IL1-4/WTpooled0.87705
WT/WTpooled0.952350.764

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.89930.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.018810.921
DC3000/delta hrp 6h0.94870.95
DC3000/delta hrp 12h0.922451
DC3000/delta hrp 24h0.436180.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.667910.085
DC3000 delta B/DC3000 delta AB0.570110.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.041231
Exp 36h0.852060.449
Exp 60h0.774450.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010561
Var 0h1.095241
Var 12h I row2-row10.861520.344
Var 12h NI row2-row11.037061
Var 36h I row2-row11.018031
Var 36h NI row2-row11.128250.482
Var 60h I row2-row11.150620.543
Var 60h NI row2-row11.026681
Time course 0hI-0hNI0.974440.892
Time course 12hI-12hNI0.945140.668
Time course 36hI-36hNI0.826680.025
Time course 60hI-60hNI0.149510.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.732020.285
transgenic ySAMdc/azygous control (breaker)1.038281
transgenic ySAMdc/azygous control (red)1.209480.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.891730.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt3.034630.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.499250.09
Manapal/WT (break)1.085051
Manapal/WT (red)1.196071