Expression of 1-1-5.4.3.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97514 | 0.76 |
27DAP/17DAP | 1.20116 | 0.825 |
39DAP/27DAP | 1.35601 | 0.256 |
41DAP/39DAP | 1.1557 | 0.844 |
42DAP/41DAP | 0.97553 | 1 |
43DAP/42DAP | 0.91264 | 0.851 |
47DAP/43DAP | 1.07477 | 0.689 |
52DAP/47DAP | 1.23623 | 0.997 |
57DAP/52DAP | 0.98198 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16342 | 0.023 |
17DAP/reference | 0.88155 | 0.046 |
27DAP/reference | 1.04557 | 0.672 |
39DAP/reference | 0.86618 | 0.081 |
41DAP/reference | 0.86509 | 0.013 |
42DAP/reference | 0.98385 | 0.398 |
43DAP/reference | 1.02227 | 0.838 |
47DAP/reference | 0.94655 | 0.148 |
52DAP/reference | 1.00979 | 1 |
57DAP/reference | 1.05615 | 0.762 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10718 | 0.881 |
27DAP/17DAP | 0.9985 | 0.943 |
39DAP/27DAP | 0.89487 | 0.514 |
41DAP/39DAP | 1.54785 | 0.016 |
42DAP/41DAP | 0.67165 | 0.01 |
43DAP/42DAP | 0.8542 | 0.089 |
47DAP/43DAP | 1.31184 | 0.147 |
52DAP/47DAP | 0.94253 | 0.801 |
57DAP/52DAP | 1.28143 | 0.483 |
57DAP/7DAP | 1.40944 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06926 | 0.564 |
17DAP/reference | 1.2916 | 0.045 |
27DAP/reference | 1.14359 | 0.197 |
39DAP/reference | 1.23005 | 0.03 |
41DAP/reference | 1.2895 | 0.223 |
42DAP/reference | 1.29037 | 0.059 |
43DAP/reference | 1.19149 | 0.167 |
47DAP/reference | 1.23708 | 0.046 |
52DAP/reference | 1.51479 | 0.008 |
57DAP/reference | 1.42799 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10376 | 0.355 |
17DAP/reference | 0.93832 | 0.269 |
27DAP/reference | 0.9989 | 0.711 |
39DAP/reference | 1.13929 | 0.146 |
41DAP/reference | 1.14183 | 0.099 |
42DAP/reference | 1.05262 | 0.744 |
43DAP/reference | 1.04797 | 0.949 |
47DAP/reference | 1.21932 | 0.013 |
52DAP/reference | 1.02389 | 0.938 |
57DAP/reference | 1.0757 | 0.131 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33193 | 0.023 |
17DAP/reference | 1.12224 | 0.612 |
27DAP/reference | 1.30983 | 0.026 |
39DAP/reference | 1.31399 | 0.016 |
41DAP/reference | 1.36268 | 0.093 |
42DAP/reference | 1.19941 | 0.258 |
43DAP/reference | 1.30476 | 0.09 |
47DAP/reference | 0.89824 | 0.103 |
52DAP/reference | 1.14553 | 0.448 |
57DAP/reference | 1.10878 | 0.2 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14427 | 0.966 |
26DAP/20DAP | 1.42299 | 0.683 |
34DAP/26DAP | 1.30838 | 0.542 |
51DAP/34DAP | 1.125 | 0.775 |
52DAP/51DAP | 1.14099 | 0.689 |
53DAP/52DAP | 1.22276 | 0.458 |
55DAP/53DAP | 1.16262 | 0.782 |
57DAP/55DAP | 0.81329 | 0.38 |
62DAP/57DAP | 1.02117 | 1 |
68DAP/62DAP | 1.20207 | 0.148 |
68DAP/14DAP | 1.37172 | 0.077 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.52682 | 0.092 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.64316 | 0.417 |
Mature Green Tomato/Ripe Tomato | 0.66024 | 0.148 |
Immature Eggplant/Mature Eggplant | 1.56316 | |
Ripe Pepper/Ripe Tomato | 0.26716 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.22028 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.86557 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.52069 | |
4-3/M82 | 0.68623 | |
5-3/M82 | 0.89628 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.24237 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.43082 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.81124 | 0.321 |
IL2-6/WTpooled | 1.08119 | 0.788 |
IL7-5/WTpooled | 0.58608 | 1 |
IL7-3/WTpooled | 0.9402 | 1 |
IL12-4/WTpooled | 0.79511 | 0.71 |
IL1-4/WTpooled | 0.91889 | 0.415 |
WT/WTpooled | 1.0711 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97723 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94687 | 1 |
DC3000/delta hrp 6h | 1.54611 | 1 |
DC3000/delta hrp 12h | 0.91689 | 1 |
DC3000/delta hrp 24h | 1.76747 | 0.051 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.61002 | 0.04 |
DC3000 delta B/DC3000 delta AB | 0.55835 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.14881 | 1 |
Exp 36h | 1.0156 | 1 |
Exp 60h | 1.52483 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97927 | 1 |
Var 0h | 0.97171 | 1 |
Var 12h I row2-row1 | 0.72618 | 0.39 |
Var 12h NI row2-row1 | 0.9471 | 0.906 |
Var 36h I row2-row1 | 1.10632 | 0.908 |
Var 36h NI row2-row1 | 1.09573 | 1 |
Var 60h I row2-row1 | 1.20982 | 0.523 |
Var 60h NI row2-row1 | 0.96983 | 1 |
Time course 0hI-0hNI | 0.95972 | 0.798 |
Time course 12hI-12hNI | 0.94053 | 0.597 |
Time course 36hI-36hNI | 0.81401 | 0.03 |
Time course 60hI-60hNI | 0.2541 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01271 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.80266 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.40767 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00181 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.50508 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0585 | 1 |
Manapal/WT (break) | 1.09334 | 1 |
Manapal/WT (red) | 0.37642 | 0.181 |
|
|