Expression of 1-1-5.4.3.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.975140.76
27DAP/17DAP1.201160.825
39DAP/27DAP1.356010.256
41DAP/39DAP1.15570.844
42DAP/41DAP0.975531
43DAP/42DAP0.912640.851
47DAP/43DAP1.074770.689
52DAP/47DAP1.236230.997
57DAP/52DAP0.981980.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.163420.023
17DAP/reference0.881550.046
27DAP/reference1.045570.672
39DAP/reference0.866180.081
41DAP/reference0.865090.013
42DAP/reference0.983850.398
43DAP/reference1.022270.838
47DAP/reference0.946550.148
52DAP/reference1.009791
57DAP/reference1.056150.762

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.107180.881
27DAP/17DAP0.99850.943
39DAP/27DAP0.894870.514
41DAP/39DAP1.547850.016
42DAP/41DAP0.671650.01
43DAP/42DAP0.85420.089
47DAP/43DAP1.311840.147
52DAP/47DAP0.942530.801
57DAP/52DAP1.281430.483
57DAP/7DAP1.409441

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069260.564
17DAP/reference1.29160.045
27DAP/reference1.143590.197
39DAP/reference1.230050.03
41DAP/reference1.28950.223
42DAP/reference1.290370.059
43DAP/reference1.191490.167
47DAP/reference1.237080.046
52DAP/reference1.514790.008
57DAP/reference1.427990.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.103760.355
17DAP/reference0.938320.269
27DAP/reference0.99890.711
39DAP/reference1.139290.146
41DAP/reference1.141830.099
42DAP/reference1.052620.744
43DAP/reference1.047970.949
47DAP/reference1.219320.013
52DAP/reference1.023890.938
57DAP/reference1.07570.131

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.331930.023
17DAP/reference1.122240.612
27DAP/reference1.309830.026
39DAP/reference1.313990.016
41DAP/reference1.362680.093
42DAP/reference1.199410.258
43DAP/reference1.304760.09
47DAP/reference0.898240.103
52DAP/reference1.145530.448
57DAP/reference1.108780.2

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.144270.966
26DAP/20DAP1.422990.683
34DAP/26DAP1.308380.542
51DAP/34DAP1.1250.775
52DAP/51DAP1.140990.689
53DAP/52DAP1.222760.458
55DAP/53DAP1.162620.782
57DAP/55DAP0.813290.38
62DAP/57DAP1.021171
68DAP/62DAP1.202070.148
68DAP/14DAP1.371720.077

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.526820.092

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.643160.417
Mature Green Tomato/Ripe Tomato0.660240.148
Immature Eggplant/Mature Eggplant1.56316
Ripe Pepper/Ripe Tomato0.267160.224
Mature Eggplant/Ripe Tomato0.220280.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.86557
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.52069
4-3/M820.68623
5-3/M820.89628
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.24237
7-2/M82N/AN/A
9-3-2/M821.43082

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.811240.321
IL2-6/WTpooled1.081190.788
IL7-5/WTpooled0.586081
IL7-3/WTpooled0.94021
IL12-4/WTpooled0.795110.71
IL1-4/WTpooled0.918890.415
WT/WTpooled1.07111

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.977231

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.946871
DC3000/delta hrp 6h1.546111
DC3000/delta hrp 12h0.916891
DC3000/delta hrp 24h1.767470.051

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.610020.04
DC3000 delta B/DC3000 delta AB0.558350.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.148811
Exp 36h1.01561
Exp 60h1.524830.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.979271
Var 0h0.971711
Var 12h I row2-row10.726180.39
Var 12h NI row2-row10.94710.906
Var 36h I row2-row11.106320.908
Var 36h NI row2-row11.095731
Var 60h I row2-row11.209820.523
Var 60h NI row2-row10.969831
Time course 0hI-0hNI0.959720.798
Time course 12hI-12hNI0.940530.597
Time course 36hI-36hNI0.814010.03
Time course 60hI-60hNI0.25410.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.012710.798
transgenic ySAMdc/azygous control (breaker)0.802660.251
transgenic ySAMdc/azygous control (red)1.407670.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.001811

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.505080.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.05851
Manapal/WT (break)1.093341
Manapal/WT (red)0.376420.181