Expression of 1-1-5.4.3.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.020550.867
27DAP/17DAP1.196090.809
39DAP/27DAP1.079080.974
41DAP/39DAP0.950840.771
42DAP/41DAP1.076940.994
43DAP/42DAP1.010811
47DAP/43DAP1.171120.497
52DAP/47DAP0.819020.54
57DAP/52DAP0.942380.833

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.537410.029
17DAP/reference1.390050.585
27DAP/reference1.812840.02
39DAP/reference1.745990.011
41DAP/reference1.616230.451
42DAP/reference1.23290.504
43DAP/reference1.87399
47DAP/reference1.249920.199
52DAP/reference1.240350.134
57DAP/reference1.00405

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.915650.311
27DAP/17DAP1.090560.699
39DAP/27DAP1.090130.496
41DAP/39DAP1.007211
42DAP/41DAP1.000880.925
43DAP/42DAP1.063340.122
47DAP/43DAP0.998820.998
52DAP/47DAP0.986480.925
57DAP/52DAP0.955470.603
57DAP/7DAP0.902061

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.040421
17DAP/reference0.977610.108
27DAP/reference0.992470.614
39DAP/reference0.934640.013
41DAP/reference0.896780.146
42DAP/reference0.79350.01
43DAP/reference0.884690.091
47DAP/reference1.309860.259
52DAP/reference0.846210.04
57DAP/reference0.863650.054

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.389950.084
17DAP/reference1.350910.025
27DAP/reference1.234220.139
39DAP/reference1.604220.013
41DAP/reference1.316890.285
42DAP/reference1.890520.009
43DAP/reference1.161360.157
47DAP/reference1.647390.02
52DAP/reference1.555620.006
57DAP/reference1.680380.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.077120.74
17DAP/reference1.003720.886
27DAP/reference0.951140.067
39DAP/reference1.035610.578
41DAP/reference0.962130.046
42DAP/reference0.977440.671
43DAP/reference1.170190.343
47DAP/reference1.108350.994
52DAP/reference1.13910.623
57DAP/reference2.259730.04

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.235920.966
26DAP/20DAP0.919011
34DAP/26DAP1.114461
51DAP/34DAP1.169020.637
52DAP/51DAP0.965251
53DAP/52DAP1.044880.921
55DAP/53DAP0.950410.675
57DAP/55DAP1.09150.666
62DAP/57DAP0.95030.466
68DAP/62DAP0.879570.722
68DAP/14DAP0.642510.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.884250.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.00938
Mature Green Tomato/Ripe Tomato0.89180.182
Immature Eggplant/Mature Eggplant2.26679
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.59832

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.179291
12-2/M82N/AN/A
12-4/M820.93651
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.96634
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.73338
4-3/M821.36812
5-3/M821.14774
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.82111
7-2/M82N/AN/A
9-3-2/M820.878371

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.912031
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.906241
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.002251
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.557630.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.085830.921
DC3000/delta hrp 6h1.454671
DC3000/delta hrp 12h0.902581
DC3000/delta hrp 24h1.009991

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.062480.355
DC3000 delta B/DC3000 delta AB1.024750.677

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.691470.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.039871
Var 0h0.550040.226
Var 12h I row2-row10.819820.353
Var 12h NI row2-row10.975060.906
Var 36h I row2-row11.129141
Var 36h NI row2-row11.01321
Var 60h I row2-row11.233010.562
Var 60h NI row2-row10.993851
Time course 0hI-0hNI0.950360.675
Time course 12hI-12hNI0.901460.11
Time course 36hI-36hNI0.718650.023
Time course 60hI-60hNI0.245540.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.108050.408
transgenic ySAMdc/azygous control (breaker)1.503860.178
transgenic ySAMdc/azygous control (red)1.172350.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.73560.057

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.938251
Manapal/WT (break)0.86091
Manapal/WT (red)0.834870.36