Expression of 1-1-5.4.3.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02055 | 0.867 |
27DAP/17DAP | 1.19609 | 0.809 |
39DAP/27DAP | 1.07908 | 0.974 |
41DAP/39DAP | 0.95084 | 0.771 |
42DAP/41DAP | 1.07694 | 0.994 |
43DAP/42DAP | 1.01081 | 1 |
47DAP/43DAP | 1.17112 | 0.497 |
52DAP/47DAP | 0.81902 | 0.54 |
57DAP/52DAP | 0.94238 | 0.833 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.53741 | 0.029 |
17DAP/reference | 1.39005 | 0.585 |
27DAP/reference | 1.81284 | 0.02 |
39DAP/reference | 1.74599 | 0.011 |
41DAP/reference | 1.61623 | 0.451 |
42DAP/reference | 1.2329 | 0.504 |
43DAP/reference | 1.87399 | |
47DAP/reference | 1.24992 | 0.199 |
52DAP/reference | 1.24035 | 0.134 |
57DAP/reference | 1.00405 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91565 | 0.311 |
27DAP/17DAP | 1.09056 | 0.699 |
39DAP/27DAP | 1.09013 | 0.496 |
41DAP/39DAP | 1.00721 | 1 |
42DAP/41DAP | 1.00088 | 0.925 |
43DAP/42DAP | 1.06334 | 0.122 |
47DAP/43DAP | 0.99882 | 0.998 |
52DAP/47DAP | 0.98648 | 0.925 |
57DAP/52DAP | 0.95547 | 0.603 |
57DAP/7DAP | 0.90206 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04042 | 1 |
17DAP/reference | 0.97761 | 0.108 |
27DAP/reference | 0.99247 | 0.614 |
39DAP/reference | 0.93464 | 0.013 |
41DAP/reference | 0.89678 | 0.146 |
42DAP/reference | 0.7935 | 0.01 |
43DAP/reference | 0.88469 | 0.091 |
47DAP/reference | 1.30986 | 0.259 |
52DAP/reference | 0.84621 | 0.04 |
57DAP/reference | 0.86365 | 0.054 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38995 | 0.084 |
17DAP/reference | 1.35091 | 0.025 |
27DAP/reference | 1.23422 | 0.139 |
39DAP/reference | 1.60422 | 0.013 |
41DAP/reference | 1.31689 | 0.285 |
42DAP/reference | 1.89052 | 0.009 |
43DAP/reference | 1.16136 | 0.157 |
47DAP/reference | 1.64739 | 0.02 |
52DAP/reference | 1.55562 | 0.006 |
57DAP/reference | 1.68038 | 0.008 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07712 | 0.74 |
17DAP/reference | 1.00372 | 0.886 |
27DAP/reference | 0.95114 | 0.067 |
39DAP/reference | 1.03561 | 0.578 |
41DAP/reference | 0.96213 | 0.046 |
42DAP/reference | 0.97744 | 0.671 |
43DAP/reference | 1.17019 | 0.343 |
47DAP/reference | 1.10835 | 0.994 |
52DAP/reference | 1.1391 | 0.623 |
57DAP/reference | 2.25973 | 0.04 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.23592 | 0.966 |
26DAP/20DAP | 0.91901 | 1 |
34DAP/26DAP | 1.11446 | 1 |
51DAP/34DAP | 1.16902 | 0.637 |
52DAP/51DAP | 0.96525 | 1 |
53DAP/52DAP | 1.04488 | 0.921 |
55DAP/53DAP | 0.95041 | 0.675 |
57DAP/55DAP | 1.0915 | 0.666 |
62DAP/57DAP | 0.9503 | 0.466 |
68DAP/62DAP | 0.87957 | 0.722 |
68DAP/14DAP | 0.64251 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.88425 | 0.122 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.00938 | |
Mature Green Tomato/Ripe Tomato | 0.8918 | 0.182 |
Immature Eggplant/Mature Eggplant | 2.26679 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.59832 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.17929 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.9365 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.96634 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.73338 | |
4-3/M82 | 1.36812 | |
5-3/M82 | 1.14774 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.82111 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.87837 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.91203 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.90624 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.00225 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.55763 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08583 | 0.921 |
DC3000/delta hrp 6h | 1.45467 | 1 |
DC3000/delta hrp 12h | 0.90258 | 1 |
DC3000/delta hrp 24h | 1.00999 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06248 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.02475 | 0.677 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.69147 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03987 | 1 |
Var 0h | 0.55004 | 0.226 |
Var 12h I row2-row1 | 0.81982 | 0.353 |
Var 12h NI row2-row1 | 0.97506 | 0.906 |
Var 36h I row2-row1 | 1.12914 | 1 |
Var 36h NI row2-row1 | 1.0132 | 1 |
Var 60h I row2-row1 | 1.23301 | 0.562 |
Var 60h NI row2-row1 | 0.99385 | 1 |
Time course 0hI-0hNI | 0.95036 | 0.675 |
Time course 12hI-12hNI | 0.90146 | 0.11 |
Time course 36hI-36hNI | 0.71865 | 0.023 |
Time course 60hI-60hNI | 0.24554 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10805 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 1.50386 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.17235 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.7356 | 0.057 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93825 | 1 |
Manapal/WT (break) | 0.8609 | 1 |
Manapal/WT (red) | 0.83487 | 0.36 |
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