Expression of 1-1-5.4.4.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79469 | 0.173 |
27DAP/17DAP | 1.11552 | 1 |
39DAP/27DAP | 0.90886 | 0.608 |
41DAP/39DAP | 0.94719 | 0.772 |
42DAP/41DAP | 1.7411 | 0.162 |
43DAP/42DAP | 1.32448 | 0.613 |
47DAP/43DAP | 0.5409 | 0.06 |
52DAP/47DAP | 0.89368 | 0.683 |
57DAP/52DAP | 1.1896 | 0.907 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02303 | 0.846 |
17DAP/reference | 0.88007 | 0.029 |
27DAP/reference | 1.03396 | 0.782 |
39DAP/reference | 0.73831 | 0.027 |
41DAP/reference | 0.86734 | 0.201 |
42DAP/reference | 1.09428 | 0.068 |
43DAP/reference | 0.82809 | |
47DAP/reference | 0.81827 | 0.065 |
52DAP/reference | 0.84128 | 0.082 |
57DAP/reference | 0.4033 | 0.096 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76641 | 0.035 |
27DAP/17DAP | 1.0738 | 0.78 |
39DAP/27DAP | 1.39597 | 0.079 |
41DAP/39DAP | 1.60702 | 0.026 |
42DAP/41DAP | 0.85181 | 0.149 |
43DAP/42DAP | 0.88282 | 0.051 |
47DAP/43DAP | 0.99951 | 0.998 |
52DAP/47DAP | 0.76974 | 0.136 |
57DAP/52DAP | 0.75394 | 0.221 |
57DAP/7DAP | 0.73285 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24161 | 0.15 |
17DAP/reference | 1.39914 | 0.006 |
27DAP/reference | 1.25063 | 0.014 |
39DAP/reference | 1.21509 | 0.01 |
41DAP/reference | 1.26158 | 0.017 |
42DAP/reference | 1.41969 | 0.009 |
43DAP/reference | 1.53928 | 0.009 |
47DAP/reference | 1.28808 | 0.224 |
52DAP/reference | 1.41159 | 0.008 |
57DAP/reference | 1.30884 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8751 | 0.277 |
17DAP/reference | 0.99575 | 0.786 |
27DAP/reference | 0.97486 | 0.554 |
39DAP/reference | 0.92129 | 0.147 |
41DAP/reference | 1.04023 | 1 |
42DAP/reference | 0.94311 | 0.212 |
43DAP/reference | 1.04104 | 0.997 |
47DAP/reference | 0.96199 | 0.221 |
52DAP/reference | 0.82159 | 0.008 |
57DAP/reference | 0.8489 | 0.144 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28367 | 0.031 |
17DAP/reference | 1.15652 | 0.42 |
27DAP/reference | 1.50665 | 0.015 |
39DAP/reference | 1.47131 | 0.007 |
41DAP/reference | 1.36573 | 0.007 |
42DAP/reference | 1.53846 | 0.008 |
43DAP/reference | 1.23343 | 0.241 |
47DAP/reference | 1.05513 | 0.966 |
52DAP/reference | 1.75174 | 0.033 |
57DAP/reference | 1.73591 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12983 | 0.966 |
26DAP/20DAP | 1.0771 | 1 |
34DAP/26DAP | 1.10536 | 1 |
51DAP/34DAP | 0.76323 | 0.171 |
52DAP/51DAP | 0.87304 | 1 |
53DAP/52DAP | 0.81977 | 0.198 |
55DAP/53DAP | 0.83127 | 0.102 |
57DAP/55DAP | 0.84349 | 0.36 |
62DAP/57DAP | 1.32106 | 0.015 |
68DAP/62DAP | 1.16406 | 0.44 |
68DAP/14DAP | 1.37899 | 0.053 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.74649 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.3472 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.80562 | 0.018 |
Immature Eggplant/Mature Eggplant | 0.41382 | 0.058 |
Ripe Pepper/Ripe Tomato | 0.6129 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.01932 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.52552 | 0.742 |
1-1-2/M82 | 0.31371 | |
12-2/M82 | 0.33073 | |
12-4/M82 | 0.71413 | 0.619 |
1-3/M82 | 1.39051 | 1 |
2-1-1/M82 | 1.44705 | 0.354 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98027 | 1 |
3-2/M82 | 1.38887 | 0.84 |
4-1-1/M82 | 0.8549 | |
4-1/M82 | 1.25903 | |
4-3-2/M82 | 0.56091 | |
4-3/M82 | 0.45529 | |
5-3/M82 | 2.40649 | 0.467 |
6-2/M82 | 0.8181 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.71732 | |
7-2/M82 | 1.10358 | 0.385 |
9-3-2/M82 | 1.38914 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03339 | 0.212 |
IL2-6/WTpooled | 1.02696 | |
IL7-5/WTpooled | 1.33837 | |
IL7-3/WTpooled | 0.94329 | 1 |
IL12-4/WTpooled | 1.16465 | 0.516 |
IL1-4/WTpooled | 1.20798 | 1 |
WT/WTpooled | 0.99834 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88725 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09012 | 0.758 |
DC3000/delta hrp 6h | 1.07882 | 1 |
DC3000/delta hrp 12h | 0.94412 | 1 |
DC3000/delta hrp 24h | 0.40603 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.58326 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.63806 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02727 | 1 |
Exp 36h | 1.02526 | 1 |
Exp 60h | 1.02251 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99586 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.90059 | |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | 1.05561 | 0.41 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 1.05854 | 0.799 |
Time course 12hI-12hNI | 0.96806 | 0.814 |
Time course 36hI-36hNI | 0.98672 | 0.504 |
Time course 60hI-60hNI | 1.12359 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97409 | 0.789 |
transgenic ySAMdc/azygous control (breaker) | 1.89324 | 0.248 |
transgenic ySAMdc/azygous control (red) | 2.07696 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.16492 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.28739 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.30175 | 0.14 |
Manapal/WT (break) | 1.43556 | 1 |
Manapal/WT (red) | 1.07177 | 1 |
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