Expression of 1-1-5.4.4.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.794690.173
27DAP/17DAP1.115521
39DAP/27DAP0.908860.608
41DAP/39DAP0.947190.772
42DAP/41DAP1.74110.162
43DAP/42DAP1.324480.613
47DAP/43DAP0.54090.06
52DAP/47DAP0.893680.683
57DAP/52DAP1.18960.907

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.023030.846
17DAP/reference0.880070.029
27DAP/reference1.033960.782
39DAP/reference0.738310.027
41DAP/reference0.867340.201
42DAP/reference1.094280.068
43DAP/reference0.82809
47DAP/reference0.818270.065
52DAP/reference0.841280.082
57DAP/reference0.40330.096

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.766410.035
27DAP/17DAP1.07380.78
39DAP/27DAP1.395970.079
41DAP/39DAP1.607020.026
42DAP/41DAP0.851810.149
43DAP/42DAP0.882820.051
47DAP/43DAP0.999510.998
52DAP/47DAP0.769740.136
57DAP/52DAP0.753940.221
57DAP/7DAP0.732851

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.241610.15
17DAP/reference1.399140.006
27DAP/reference1.250630.014
39DAP/reference1.215090.01
41DAP/reference1.261580.017
42DAP/reference1.419690.009
43DAP/reference1.539280.009
47DAP/reference1.288080.224
52DAP/reference1.411590.008
57DAP/reference1.308840.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.87510.277
17DAP/reference0.995750.786
27DAP/reference0.974860.554
39DAP/reference0.921290.147
41DAP/reference1.040231
42DAP/reference0.943110.212
43DAP/reference1.041040.997
47DAP/reference0.961990.221
52DAP/reference0.821590.008
57DAP/reference0.84890.144

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.283670.031
17DAP/reference1.156520.42
27DAP/reference1.506650.015
39DAP/reference1.471310.007
41DAP/reference1.365730.007
42DAP/reference1.538460.008
43DAP/reference1.233430.241
47DAP/reference1.055130.966
52DAP/reference1.751740.033
57DAP/reference1.735910.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.129830.966
26DAP/20DAP1.07711
34DAP/26DAP1.105361
51DAP/34DAP0.763230.171
52DAP/51DAP0.873041
53DAP/52DAP0.819770.198
55DAP/53DAP0.831270.102
57DAP/55DAP0.843490.36
62DAP/57DAP1.321060.015
68DAP/62DAP1.164060.44
68DAP/14DAP1.378990.053

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.746490.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.34720.058
Mature Green Tomato/Ripe Tomato1.805620.018
Immature Eggplant/Mature Eggplant0.413820.058
Ripe Pepper/Ripe Tomato0.61290.224
Mature Eggplant/Ripe Tomato1.019321

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.525520.742
1-1-2/M820.31371
12-2/M820.33073
12-4/M820.714130.619
1-3/M821.390511
2-1-1/M821.447050.354
2-1/M82N/AN/A
2-6/M820.980271
3-2/M821.388870.84
4-1-1/M820.8549
4-1/M821.25903
4-3-2/M820.56091
4-3/M820.45529
5-3/M822.406490.467
6-2/M820.8181
6-3/M82N/AN/A
7-1/M820.71732
7-2/M821.103580.385
9-3-2/M821.389141

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.033390.212
IL2-6/WTpooled1.02696
IL7-5/WTpooled1.33837
IL7-3/WTpooled0.943291
IL12-4/WTpooled1.164650.516
IL1-4/WTpooled1.207981
WT/WTpooled0.998341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.887250.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.090120.758
DC3000/delta hrp 6h1.078821
DC3000/delta hrp 12h0.944121
DC3000/delta hrp 24h0.406030.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.583260.023
DC3000 delta B/DC3000 delta AB0.638060.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.027271
Exp 36h1.025261
Exp 60h1.022511

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995861
Var 0hN/AN/A
Var 12h I row2-row10.90059
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row11.055610.41
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI1.058540.799
Time course 12hI-12hNI0.968060.814
Time course 36hI-36hNI0.986720.504
Time course 60hI-60hNI1.123590.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.974090.789
transgenic ySAMdc/azygous control (breaker)1.893240.248
transgenic ySAMdc/azygous control (red)2.076960.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.164920.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.287390.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.301750.14
Manapal/WT (break)1.435561
Manapal/WT (red)1.071771